| ID | SAVERM_3587
| Type | CDS
|
| From | 4441197
| nt length | 888
|
| To | 4440310
| aa length | 295
|
| Gene | ksgA
| pI | 6.37
|
| Definition | putative dimethyladenosine transferase
| M.W (Da) | 31021
|
| Note | PF00398: Ribosomal RNA adenine dimethylase
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | detoxification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3149 putative dimethyladenosine transferase | 481 | 2.0e-174
|
| sgr | SGR_4356 putative dimethyladenosine transferase | 469 | 1.0e-169
|
| sam | SAM23877_3196 Ribosomal RNA small subunit methyltransferase A | 481 | 2.0e-174
|
| scab | SCAB53861 putative dimethyladenosine transferase | 442 | 2.0e-158
|
| sace | SACE_0802 dimethyladenosine transferase (rRNA methylation) | 318 | 2.0e-110
|
| nfar | nfa49030 ksgA ribosomal RNA adenine dimethyltransferase | 326 | 1.7e-90
|
| mtub | gi|15608150 dimethyladenosine transferase [Mycobacterium tuberculosis H37Rv] | 265 | 2.7e-72
|
| cglu | gi|19552136 COG0030:Dimethyladenosine transferase (rRNA methylation) [Corynebacterium glutamicum] | 311 | 3.1e-86
|
| bsub | BG10105 ksgA; dimethyladenosine transferase [EC:2.1.1.-] | 157 | 5.4e-40
|
| ecoli | gi|16128045 dimethyladenosine transferase [Escherichia coli K12] | 115 | 3.5e-27
|
| paer | PA0592 [gene=ksgA] [prot=rRNA (adenine-N6,N6)-dimethyltransferase] [comment=PA0592] | 134 | 1.3e-32
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RrnaAD | 1 | Ribosomal RNA adenine dimethylase | 28-283 | 140.1 | 6.2e-41
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498108.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltra...
| 1312 | 0.0e+00 |
|
| 1239 | 1.7e-170 |
| SNX61798.1 | dimethyladenosine transferase [Streptomyces sp. TLI_55]
| 1242 | 2.2e-170 |
| WP_099501881.1 | MULTISPECIES: 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6...
| 1238 | 2.9e-170 |
| WP_210914599.1 | MULTISPECIES: 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6...
| 1234 | 7.6e-170 |
| WP_078940860.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltra...
| 1239 | 8.4e-170 |
| NEV90388.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransfer...
| 1233 | 8.4e-170 |
| WP_061444279.1 | MULTISPECIES: 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6...
| 1233 | 1.0e-169 |
| WP_030844933.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltra...
| 1233 | 1.3e-169 |
| NED36011.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransfer...
| 1234 | 1.5e-169 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1617 | Seems to have no N-terminal signal seq.
|