| ID | SAVERM_3614
| Type | CDS
|
| From | 4470979
| nt length | 552
|
| To | 4470428
| aa length | 183
|
| Gene |
| pI | 6.12
|
| Definition | hypothetical protein
| M.W (Da) | 19475
|
| Note | PF04073: YbaK / prolyl-tRNA synthetases associated domain
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3165 hypothetical protein | 246 | 4.0e-85
|
| sgr | SGR_4336 conserved hypothetical protein | 238 | 4.0e-82
|
| sam | SAM23877_3211 hypothetical protein | 244 | 3.0e-84
|
| scab | SCAB53591 hypothetical protein | 241 | 4.0e-83
|
| sace | SACE_0227 YbaK/prolyl-tRNA synthetase associated region | 92 | 5.0e-25
|
| nfar | nfa28580 hypothetical protein | 124 | 4.9e-30
|
| bsub | BG12462 ywhH; similar to hypothetical proteins | 57 | 5.0e-10
|
| paer | PA1357 [gene=PA1357] [prot=conserved hypothetical protein] [comment=PA1357] | 60 | 9.1e-11
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| tRNA_edit | 1 | Aminoacyl-tRNA editing domain | 52-168 | 93.5 | 8.9e-27
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| GHH45718.1 | aminoacyl-tRNA deacylase [Streptomyces umbrinus]
| 726 | 7.9e-96 |
| GHB16350.1 | aminoacyl-tRNA deacylase [Streptomyces umbrinus]
| 718 | 1.4e-94 |
| GGV86145.1 | aminoacyl-tRNA deacylase [Streptomyces griseoloalbus]
| 707 | 8.7e-93 |
| GGW81594.1 | aminoacyl-tRNA deacylase [Streptomyces albaduncus]
| 706 | 1.1e-92 |
| WP_190181108.1 | YbaK/EbsC family protein [Streptomyces naganishii] >dbj
| 702 | 1.5e-92 |
| WP_161369803.1 | YbaK/EbsC family protein [Streptomyces sp. SID5643] >gb
| 694 | 2.2e-91 |
| WP_190229112.1 | YbaK/EbsC family protein [Streptomyces umbrinus]
| 693 | 2.8e-91 |
| WP_210576499.1 | YbaK/EbsC family protein [Streptomyces sp. GESEQ-4]
| 692 | 7.6e-91 |
| WP_107457034.1 | YbaK/EbsC family protein [Streptomyces sp. A244] >gb
| 691 | 8.0e-91 |
| RPF34115.1 | prolyl-tRNA editing enzyme YbaK/EbsC (Cys-tRNA(Pro) deacylase) [S...
| 693 | 1.1e-90 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2020 | Seems to have no N-terminal signal seq.
|