| ID | SAVERM_3628
| Type | CDS
|
| From | 4484641
| nt length | 864
|
| To | 4483778
| aa length | 287
|
| Gene | exoA
| pI | 6.32
|
| Definition | putative exodeoxyribonuclease
| M.W (Da) | 31888
|
| Note | PF03372: Endonuclease/Exonuclease/phosphatase family
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3174 putative exodeoxyribonuclease | 484 | 7.0e-176
|
| sgr | SGR_4310 putative exodeoxyribonuclease | 427 | 1.0e-153
|
| sam | SAM23877_3223 Exodeoxyribonuclease III | 491 | 1.0e-178
|
| scab | SCAB53211 putative exodeoxyribonuclease | 478 | 2.0e-173
|
| sace | SACE_6601 AP endonuclease, family 1:exodeoxyribonuclease III xth | 396 | 2.0e-141
|
| nfar | nfa9310 exonuclease | 337 | 5.5e-94
|
| cglu | gi|19551901 COG0708:Exonuclease III [Corynebacterium glutamicum] | 254 | 3.3e-69
|
| bsub | BG10046 exoA; multifunctional DNA-repair enzyme [EC:3.1.11.2] | 179 | 1.7e-46
|
| ecoli | gi|16129703 exonuclease III [Escherichia coli K12] | 125 | 3.2e-30
|
| paer | PA5332 [gene=crc] [prot=catabolite repression control protein] [comment=PA5332] | 180 | 1.2e-46
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Exo_endo_phos | 1 | Endonuclease/Exonuclease/phosphatase family | 26-278 | 67.5 | 1.1e-18
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| GHD63554.1 | exodeoxyribonuclease [Streptomyces mirabilis]
| 1330 | 0.0e+00 |
| WP_211178999.1 | exodeoxyribonuclease III [Streptomyces sp. RLA2-12]
| 1327 | 0.0e+00 |
| PBC98353.1 | exodeoxyribonuclease-3 [Streptomyces sp. Ag82_O1-15]
| 1308 | 0.0e+00 |
| WP_143638876.1 | exodeoxyribonuclease III [Streptomyces sp. IB201691-2A2] >lc...
| 1308 | 0.0e+00 |
| GAX54015.1 | exodeoxyribonuclease [Streptomyces olivochromogenes]
| 1305 | 0.0e+00 |
| SOE73721.1 | exodeoxyribonuclease-3 [Streptomyces sp. OV198]
| 1305 | 0.0e+00 |
| EST26683.1 | exodeoxyribonuclease III [Streptomyces roseochromogenus subsp. os...
| 1303 | 1.1e-180 |
| KOU57445.1 | exodeoxyribonuclease III [Streptomyces sp. MMG1533]
| 1302 | 1.8e-180 |
| SOE28379.1 | exodeoxyribonuclease-3 [Streptomyces sp. OK228]
| 1300 | 2.8e-180 |
| WP_221299925.1 | exodeoxyribonuclease III [Streptomyces violarus]
| 1296 | 1.7e-179 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1123 | Seems to have no N-terminal signal seq.
|