| ID | SAVERM_3858
| Type | CDS
|
| From | 4766940
| nt length | 675
|
| To | 4766266
| aa length | 224
|
| Gene | pdxH1
| pI | 6.52
|
| Definition | putative pyridoxamine 5’-phosphate oxidase
| M.W (Da) | 25500
|
| Note | PF01243: Pyridoxamine 5'-phosphate oxidase
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4387 putative pyridoxamine oxidase | 345 | 1.0e-122
|
| sgr | SGR_3075 putative pyridoxamine 5'-phosphate oxidase | 313 | 3.0e-110
|
| sam | SAM23877_3340 pyridoxine 5'-phosphate oxidase | 335 | 6.0e-119
|
| scab | SCAB51331 putative pyridoxamine 5'-phosphate oxidase | 360 | 7.0e-129
|
| sace | SACE_0641 pyridoxamine 5'-phosphate oxidase | 209 | 3.0e-69
|
| nfar | nfa6600 pyridoxamine 5'-phosphate oxidase | 170 | 1.1e-43
|
| mtub | gi|15609744 pyridoxamine 5'-phosphate oxidase [Mycobacterium tuberculosis H37Rv] | 175 | 2.6e-45
|
| ecoli | gi|16129596 pyridoxamine 5'-phosphate oxidase [Escherichia coli K12] | 206 | 1.0e-54
|
| paer | PA1049 [gene=pdxH] [prot=pyridoxine 5'-phosphate oxidase] [comment=PA1049] | 188 | 3.0e-49
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Putative_PNPOx | 1 | Pyridoxamine 5'-phosphate oxidase | 48-127 | 82.6 | 1.6e-23
|
| PNP_phzG_C | 1 | Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region | 183-224 | 67.7 | 6.1e-19
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497466.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces sp. SID5469]
| 1121 | 1.1e-154 |
| RPE42970.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces sp. Ag109_O5-1]
| 1000 | 2.2e-136 |
| WP_185149637.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces sp. Ag109_O5...
| 1000 | 1.0e-135 |
| RMB83264.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces shenzhenensis]
| 993 | 2.3e-135 |
| WP_192583276.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces albicerus]
| 991 | 5.1e-135 |
| WP_235457654.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces olivochromog...
| 988 | 1.2e-134 |
| WP_055490651.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces sp. TP-A0356...
| 986 | 2.5e-134 |
| OIJ69863.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces mangrovisoli]
| 982 | 9.5e-134 |
| WP_229713234.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces fuscichromog...
| 980 | 2.6e-133 |
| WP_174855988.1 | pyridoxamine 5'-phosphate oxidase [Streptomyces hyaluromycin...
| 979 | 4.7e-133 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3705 | Seems to have no N-terminal signal seq.
|