| ID | SAVERM_3923
| Type | CDS
|
| From | 4843479
| nt length | 927
|
| To | 4844405
| aa length | 308
|
| Gene |
| pI | 6.96
|
| Definition | putative RpiR-family transcriptional regulator
| M.W (Da) | 31768
|
| Note | PF01380: SIS domain
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4308 putative transcriptional regulator | 468 | 2.0e-168
|
| sgr | SGR_3199 putative RpiR-family transcriptional regulator | 483 | 2.0e-174
|
| sam | SAM23877_3404 Transcriptional regulator | 487 | 7.0e-176
|
| scab | SCAB50601 putative RpiR-family transcriptional regulator | 482 | 1.0e-173
|
| sace | SACE_0353 RpiR-family transcriptional regulator | 231 | 2.0e-75
|
| mtub | gi|15607255 PROBABLE SEDOHEPTULOSE-7-PHOSPHATE ISOMERASE GMHA (PHOSPHOHEPTOSE ISOMERASE) [Mycobacterium tuberculosis H37Rv] | 39 | 3.4e-04
|
| cglu | gi|19552672 COG1737:Transcriptional regulators [Corynebacterium glutamicum] | 103 | 1.3e-23
|
| bsub | BG11569 ybbH; similar to hypothetical proteins | 142 | 1.9e-35
|
| ecoli | gi|16130352 hypothetical protein b2427 [Escherichia coli K12] | 133 | 1.3e-32
|
| paer | PA5438 [gene=PA5438] [prot=probable transcriptional regulator] [comment=PA5438] | 128 | 5.8e-31
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SIS | 1 | SIS domain | 149-278 | 76.6 | 1.4e-21
|
| HTH_6 | 1 | Helix-turn-helix domain, rpiR family | 23-96 | 49.2 | 3.7e-13
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_055616389.1 | MurR/RpiR family transcriptional regulator [Streptomyces pha...
| 1055 | 3.9e-142 |
| WP_151480103.1 | MurR/RpiR family transcriptional regulator [Streptomyces alb...
| 1049 | 3.0e-141 |
| WP_189836845.1 | MurR/RpiR family transcriptional regulator [Streptomyces umb...
| 1049 | 3.6e-141 |
| WP_054235156.1 | MULTISPECIES: MurR/RpiR family transcriptional regulator [un...
| 1034 | 5.6e-139 |
| WP_168492895.1 | MULTISPECIES: MurR/RpiR family transcriptional regulator [St...
| 1031 | 1.6e-138 |
| WP_189771828.1 | MurR/RpiR family transcriptional regulator [Streptomyces tau...
| 1031 | 1.7e-138 |
| WP_143630979.1 | MurR/RpiR family transcriptional regulator [Streptomyces sp....
| 1029 | 3.4e-138 |
|
| 1029 | 3.9e-138 |
| WP_107015335.1 | MurR/RpiR family transcriptional regulator [Streptomyces dio...
| 1029 | 4.0e-138 |
| WP_210881123.1 | MurR/RpiR family transcriptional regulator [Streptomyces sp....
| 1029 | 4.0e-138 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0359 | Seems to have no N-terminal signal seq.
|