| ID | SAVERM_3932
| Type | CDS
|
| From | 4856359
| nt length | 207
|
| To | 4856153
| aa length | 68
|
| Gene | cspB2
| pI | 4.56
|
| Definition | putative cold shock protein
| M.W (Da) | 7444
|
| Note | PF00313: 'Cold-shock' DNA-binding domain
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | adaptation to atypical conditions
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4295 scoF4 cold shock protein | 134 | 2.0e-44
|
| sgr | SGR_3226 putative cold shock protein | 136 | 5.0e-45
|
| sam | SAM23877_3411 cold shock protein-like protein | 134 | 2.0e-44
|
| scab | SCAB50421 putative cold shock protein | 137 | 2.0e-45
|
| sace | SACE_1442 cold-shock DNA-binding domain protein | 104 | 2.0e-32
|
| bsub | BG11531 cspD; cold shock protein | 91 | 6.4e-21
|
| paer | PA0456 [gene=PA0456] [prot=probable cold-shock protein] [comment=PA0456] | 86 | 4.2e-19
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| CSD | 1 | 'Cold-shock' DNA-binding domain | 3-64 | 104.0 | 2.6e-30
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1962 | Seems to have no N-terminal signal seq.
|