| ID | SAVERM_3954
| Type | CDS
|
| From | 4879224
| nt length | 795
|
| To | 4878430
| aa length | 264
|
| Gene |
| pI | 5.04
|
| Definition | hypothetical protein
| M.W (Da) | 27428
|
| Note | PF00805: Pentapeptide repeats (8 copies)
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4268 hypothetical protein | 334 | 4.0e-117
|
| sgr | SGR_4039 conserved hypothetical protein | 297 | 3.0e-103
|
| sam | SAM23877_3437 hypothetical protein | 343 | 3.0e-121
|
| scab | SCAB50211 hypothetical protein | 347 | 1.0e-122
|
| mtub | gi|15610497 hypothetical protein Rv3361c [Mycobacterium tuberculosis H37Rv] | 49 | 2.7e-07
|
| cglu | gi|19552645 COG1357:Uncharacterized low-complexity proteins [Corynebacterium glutamicum] | 120 | 6.7e-29
|
| bsub | BG13103 yisX; hypothetical protein | 48 | 4.0e-07
|
| ecoli | gi|16131892 hypothetical protein b4066 [Escherichia coli K12] | 39 | 2.1e-04
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Pentapeptide_4 | 2 | Pentapeptide repeats (9 copies) | 92-164, 164-218 | 65.8 | 2.6e-18
|
| Pentapeptide | 2 | Pentapeptide repeats (8 copies) | 172-209, 188-221 | 57.0 | 9.6e-16
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_078234398.1 | MULTISPECIES: pentapeptide repeat-containing protein [Strept...
| 998 | 4.0e-135 |
| WP_078912664.1 | pentapeptide repeat-containing protein [Streptomyces sp. NRR...
| 854 | 1.8e-113 |
| WP_107456798.1 | pentapeptide repeat-containing protein [Streptomyces sp. A24...
| 853 | 1.9e-113 |
| WP_167358914.1 | pentapeptide repeat-containing protein [Streptomyces curacoi...
| 855 | 2.8e-113 |
| RPF34445.1 | pentapeptide repeat protein [Streptomyces sp. TLI_185]
| 852 | 3.3e-113 |
| WP_078625518.1 | pentapeptide repeat-containing protein [Streptomyces iakyrus...
| 852 | 3.5e-113 |
| WP_123965935.1 | pentapeptide repeat-containing protein [Streptomyces sp. TLI...
| 852 | 4.2e-113 |
| PBC62877.1 | hypothetical protein BKI49_16650 [Streptomyces sp. Tue6028]
| 854 | 5.2e-113 |
| WP_234307532.1 | MULTISPECIES: pentapeptide repeat-containing protein [unclas...
| 848 | 1.3e-112 |
| WP_102913775.1 | pentapeptide repeat-containing protein [Streptomyces cahuita...
| 848 | 1.4e-112 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0562 | Seems to have no N-terminal signal seq.
|