| ID | SAVERM_4042
| Type | CDS
|
| From | 4960555
| nt length | 810
|
| To | 4961364
| aa length | 269
|
| Gene |
| pI | 4.92
|
| Definition | putative two-component system response regulator
| M.W (Da) | 28732
|
| Note | PF00486: Transcriptional regulatory protein, C terminal
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4159 glnR transcriptional regulatory protein | 447 | 6.0e-162
|
| sgr | SGR_3960 putative two-component systen response regulator | 440 | 6.0e-159
|
| sam | SAM23877_3522 Transcriptional regulatory protein GlnR | 454 | 1.0e-164
|
| scab | SCAB49561 putative two-component system response regulator | 460 | 9.0e-167
|
| sace | SACE_7101 transcriptional regulator | 267 | 9.0e-91
|
| nfar | nfa5980 transcriptional regulator | 276 | 1.0e-75
|
| mtub | gi|15607958 TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 287 | 6.0e-79
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Trans_reg_C | 1 | Transcriptional regulatory protein, C terminal | 146-219 | 99.6 | 7e-29
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_107466173.1 | response regulator transcription factor [Streptomyces sp. MA...
| 1261 | 6.2e-175 |
| WP_030596079.1 | response regulator transcription factor [Streptomyces fulvov...
| 1257 | 3.6e-174 |
|
| 1254 | 1.2e-173 |
| WP_057608757.1 | response regulator transcription factor [Streptomyces sp. Ro...
| 1252 | 2.3e-173 |
| WP_210577732.1 | response regulator transcription factor [Streptomyces sp. GE...
| 1251 | 2.6e-173 |
| WP_099963482.1 | response regulator transcription factor [Streptomyces sp. JV...
| 1250 | 3.0e-173 |
| WP_200306749.1 | response regulator transcription factor [Streptomyces adelai...
| 1247 | 1.0e-172 |
| WP_059206795.1 | response regulator transcription factor [Streptomyces canus]...
| 1247 | 1.1e-172 |
| WP_155058934.1 | response regulator transcription factor [Streptomyces blatte...
| 1246 | 1.4e-172 |
| WP_062051929.1 | response regulator transcription factor [Streptomyces canus]...
| 1247 | 1.4e-172 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1468 | Seems to have a cleavable N-term signal seq.
|