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IDSAVERM_4064 TypeCDS
From4984223 nt length540
To4983684 aa length179
Genesig33 pI11.04
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)19904
Notesimilar to SCO4146, PF04542: Sigma-70 region 2 AseI frg.G1
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4146 putative ECF subfamily sigma factor2794.0e-98
samSAM23877_3537 Sigma-70 family RNA polymerase sigma factor3169.0e-113
scabSCAB7181 putative RNA polymerase sigma factor2852.0e-100
saceSACE_0141 ECF subfamily sigma factor1424.0e-44

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 225-8953.11.8e-14

Sigma70_r4_21Sigma-70, region 4124-17447.97.1e-13

Sigma70_r41Sigma-70, region 4127-17634.41.1e-08

Sigma70_ECF1ECF sigma factor9-17826.83.8e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_030941569.1 RNA polymerase sigma factor [Streptomyces sp. NRRL S-646] 6665.3e-87
WP_123966031.1 RNA polymerase sigma factor [Streptomyces sp. TLI_185] >gb 6649.6e-87
6612.5e-86
WP_142153218.1 RNA polymerase sigma factor [Streptomyces sp. SLBN-31] >lcl 6603.7e-86
WP_153289822.1 RNA polymerase sigma factor [Streptomyces fagopyri] >gb 6604.1e-86
NNN37089.1 RNA polymerase sigma factor [Streptomyces sp. S3(2020)] 6595.7e-86
6561.6e-85
WP_046263606.1 RNA polymerase sigma factor [Streptomyces sp. WM6386] >gb 6561.9e-85
WP_059195759.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 6561.9e-85
NUO44190.1 RNA polymerase sigma factor [Streptomyces sp.] >gb 6552.2e-85

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2662 Seems to have no N-terminal signal seq.