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IDSAVERM_4185 TypeCDS
From5134202 nt length930
To5135131 aa length309
Genesig34 pI6.9
Definitionputative RNA polymerase sigma factor M.W (Da)33985
Notesimilar to SCO4035:sigF, RNA polymerase alternative sigma factor, PF04542: Sigma-70 region 2 AseI frg.H
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4035 RNA polymerase sigma factor (fragment)4942.0e-179
sgrSGR_3551 "RNA polymerase sigma factor, sigma F"4913.0e-178
samSAM23877_3649 RNA polymerase sigma-F factor4962.0e-179
scabSCAB47291 putative RNA polymerase sigma factor5260.0e+00

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 289-15867.56e-19

Sigma70_r41Sigma-70, region 4254-30264.15.7e-18

Sigma70_r31Sigma-70 region 3168-23158.74.2e-16

Sigma70_r4_21Sigma-70, region 4249-30140.41.6e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_079060264.1 RNA polymerase sigma factor SigF [Streptomyces bungoensis] 11592.2e-158
KUN83802.1 RNA polymerase subunit sigma [Streptomyces bungoensis] 11582.5e-158
WP_185947365.1 RNA polymerase sigma factor SigF [Streptomyces mexicanus] >l... 11583.1e-158
WP_229863655.1 RNA polymerase sigma factor SigF [Streptomyces thermodiastat... 11583.5e-158
WP_111004736.1 RNA polymerase sigma factor SigF, partial [Streptomyces sp. ... 11556.0e-158
WP_125500335.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11569.6e-158
WP_155060072.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11561.1e-157
WP_229814392.1 RNA polymerase sigma factor SigF [Streptomyces thermoviolace... 11541.2e-157
WP_141366469.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11572.1e-157
GED86052.1 RNA polymerase sigma-F factor [Streptomyces sp. 6-11-2] 11572.2e-157

PSORT result

LocalizationCertaintyPSORT said
outside0.3000 Seems to have a cleavable N-term signal seq.