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IDSAVERM_4186 TypeCDS
From5135376 nt length924
To5136299 aa length307
Genesig35 pI4.59
Definitionputative RNA polymerase sigma factor M.W (Da)33558
NoteRNA polymerase alternative sigma factor sigN, PF04542: Sigma-70 region 2 AseI frg.H
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4034 putative RNA polymerase sigma factor5220.0e+00
sgrSGR_3552 "RNA polymerase sigma factor, sigma L"4894.0e-177
samSAM23877_3650 RNA polymerase sigma-F factor5350.0e+00
scabSCAB47281 putative RNA polymerase sigma factor5410.0e+00

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4253-30273.18.6e-21

Sigma70_r21Sigma-70 region 286-15563.97.7e-18

Sigma70_r31Sigma-70 region 3167-22546.92.1e-12

Sigma70_r4_21Sigma-70, region 4253-30039.43.2e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
QIY96906.1 RNA polymerase sigma factor SigF [Streptomyces sp. S1D4-11] 13520.0e+00
WP_099505403.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13290.0e+00
WP_054235068.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13290.0e+00
WP_149512589.1 RNA polymerase sigma factor SigF [Streptomyces apricus] >lcl... 13290.0e+00
WP_055618261.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13290.0e+00
WP_143643418.1 RNA polymerase sigma factor SigF [Streptomyces sp. IB201691-... 13240.0e+00
WP_168493265.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13220.0e+00
WP_190191726.1 RNA polymerase sigma factor SigF [Streptomyces minutisclerot... 13170.0e+00
WP_028804497.1 RNA polymerase sigma factor SigF [Streptomyces sp. 142MFCol3... 13170.0e+00
WP_095935330.1 RNA polymerase sigma factor SigF [Streptomyces sp. Tue6028] ... 13160.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2965 Seems to have no N-terminal signal seq.