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IDSAVERM_4207 TypeCDS
From5163124 nt length471
To5162654 aa length156
Genesig36 pI7.52
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)17581
Notesimilar to SCO4005, PF08281: Sigma-70, region 4 AseI frg.H
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4005 putative RNA polymerase sigma factor2874.0e-102
sgrSGR_3603 putative RNA polymerase ECF-subfamily sigma factor2837.0e-100
samSAM23877_3676 RNA polymerase sigma factor2802.0e-98
scabSCAB47081 putative RNA polymerase sigma factor3007.0e-107
saceSACE_0128 RNA polymerase ECF sigma factor1083.0e-31

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 494-14667.45.8e-19

Sigma70_r41Sigma-70, region 499-14853.79.9e-15

Sigma70_r21Sigma-70 region 24-6636.04e-09

Sigma70_ECF1ECF sigma factor50-13823.05.7e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_149826936.1 SigE family RNA polymerase sigma factor [Streptomyces tailan... 7842.4e-105
WP_168493412.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7824.1e-105
WP_148009207.1 SigE family RNA polymerase sigma factor [Streptomyces sp. me... 7825.5e-105
WP_075031419.1 SigE family RNA polymerase sigma factor [Streptomyces mirabi... 7809.8e-105
WP_200305357.1 SigE family RNA polymerase sigma factor [Streptomyces adelai... 7781.2e-104
WP_054235087.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 7781.6e-104
WP_189780976.1 SigE family RNA polymerase sigma factor [Streptomyces capiti... 7782.1e-104
WP_086761357.1 SigE family RNA polymerase sigma factor [Streptomyces scabie... 7725.3e-104
WP_095853762.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7746.3e-104
QFQ98590.1 SigE family RNA polymerase sigma factor [Streptomyces phaeolivace... 7718.1e-104

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3488 Seems to have no N-terminal signal seq.