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IDSAVERM_424 TypeCDS
From574845 nt length939
To573907 aa length312
Genesig3 pI6.81
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)34100
Notesimilar to SCO0159, PF04542: Sigma-70 region 2 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0159 putative ECF sigma factor4504.0e-161
sgrSGR_240 putative RNA polymerase ECF-subfamily sigma factor5010.0e+00
samSAM23877_0352 putative RNA polymerase ECF-subfamily sigma factor5170.0e+00
scabSCAB3921 putative RNA polymerase sigma factor3472.0e-120
saceSACE_1418 putative ECF-family RNA polymerase sigma factor2191.0e-70
paerPA1300 [gene=PA1300] [prot=probable sigma-70 factor, ECF subfamily] [comment=PA1300]763.5e-15

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; paer, Pseudomonas aeruginosa;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 210-7263.11.5e-17

Sigma70_r4_21Sigma-70, region 4108-15850.88.8e-14

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_181763694.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 13580.0e+00
WP_215135999.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13530.0e+00
WP_175331295.1 sigma-70 family RNA polymerase sigma factor [Streptomyces lu... 13520.0e+00
WP_108147707.1 sigma-70 family RNA polymerase sigma factor [Streptomyces lu... 13500.0e+00
WP_175255397.1 sigma-70 family RNA polymerase sigma factor [Streptomyces lu... 13490.0e+00
WP_129798247.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13470.0e+00
WP_215092186.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13410.0e+00
WP_214932923.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 13410.0e+00
WP_175307462.1 sigma-70 family RNA polymerase sigma factor [Streptomyces lu... 13400.0e+00
WP_215062647.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13370.0e+00

PSORT result

LocalizationCertaintyPSORT said
membrane0.1935 Seems to have no N-terminal signal seq.