| ID | SAVERM_4271
| Type | CDS
|
| From | 5237980
| nt length | 381
|
| To | 5238360
| aa length | 126
|
| Gene |
| pI | 9.18
|
| Definition | putative membrane protein
| M.W (Da) | 13530
|
| Note | PF04020: Membrane protein of unknown function
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3922 putative membrane protein | 201 | 4.0e-69
|
| sgr | SGR_3659 putative membrane protein | 199 | 3.0e-68
|
| sam | SAM23877_3733 conserved membrane protein of unknown function | 204 | 5.0e-70
|
| scab | SCAB46271 hypothetical protein | 199 | 5.0e-68
|
| sace | SACE_1949 putative membrane protein | 100 | 6.0e-29
|
| nfar | nfa51480 membrane protein | 108 | 1.1e-25
|
| mtub | gi|15609040 PROBABLE CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] | 90 | 3.1e-20
|
| cglu | gi|19551468 COG1950:Predicted membrane protein [Corynebacterium glutamicum] | 81 | 1.0e-17
|
| bsub | BG14119 yvlD; hypothetical protein | 65 | 7.3e-13
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Phage_holin_4_2 | 1 | Mycobacterial 4 TMS phage holin, superfamily IV | 3-115 | 109.0 | 1.6e-31
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189187167.1 | phage holin family protein [Streptomyces albiflavescens] >db...
| 576 | 4.8e-75 |
| WP_095935409.1 | phage holin family protein [Streptomyces sp. Tue6028] >gb
| 573 | 1.4e-74 |
| WP_081218299.1 | phage holin family protein [Streptomyces sp. M41(2017)] >gb
| 572 | 2.3e-74 |
| WP_103837261.1 | MULTISPECIES: phage holin family protein [unclassified Strep...
| 571 | 2.5e-74 |
| WP_188337930.1 | phage holin family protein [Streptomyces xanthii] >gb
| 571 | 2.6e-74 |
| WP_099501999.1 | MULTISPECIES: phage holin family protein [Streptomyces] >gb
| 571 | 3.4e-74 |
| WP_164372680.1 | phage holin family protein [Streptomyces sp. SID14446] >gb
| 571 | 3.6e-74 |
| WP_079661206.1 | phage holin family protein [Streptomyces sp. 3214.6] >emb
| 569 | 5.6e-74 |
| WP_028804067.1 | phage holin family protein [Streptomyces sp. 142MFCol3.1]
| 569 | 5.8e-74 |
| WP_171398231.1 | phage holin family protein [Streptomyces asoensis] >gb
| 569 | 6.6e-74 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4503 | Seems to have a cleavable N-term signal seq.
|