| ID | SAVERM_4367
| Type | CDS
|
| From | 5345833
| nt length | 1035
|
| To | 5346867
| aa length | 344
|
| Gene |
| pI | 9.36
|
| Definition | putative membrane protein
| M.W (Da) | 37041
|
| Note | PF02254: TrkA-N domain
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3826 putative membrane protein | 578 | 0.0e+00
|
| sgr | SGR_3753 putative membrane protein | 534 | 0.0e+00
|
| sam | SAM23877_3831 Potassium channel protein | 590 | 0.0e+00
|
| scab | SCAB45261 putative membrane protein | 590 | 0.0e+00
|
| sace | SACE_1081 possible transmembrane cation transporter | 323 | 6.0e-110
|
| nfar | nfa45360 hypothetical protein | 322 | 2.3e-89
|
| mtub | gi|15610336 POSSIBLE TRANSMEMBRANE CATION TRANSPORTER [Mycobacterium tuberculosis H37Rv] | 318 | 3.3e-88
|
| cglu | gi|19552003 COG1226:Kef-type K+ transport systems, predicted NAD-binding component [Corynebacterium glutamicum] | 280 | 5.4e-77
|
| bsub | BG12369 yugO; similar to potassium channel protein | 51 | 6.7e-08
|
| ecoli | gi|16129211 putative potassium channel protein [Escherichia coli K12] | 74 | 1.1e-14
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TrkA_N | 1 | TrkA-N domain | 125-241 | 96.0 | 1.6e-27
|
| Ion_trans_2 | 1 | Ion channel | 21-104 | 52.5 | 3.2e-14
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_237529481.1 | potassium channel family protein [Streptomyces sp. SID5469]
| 1379 | 0.0e+00 |
| KPI06563.1 | TrkA-N domain protein [Actinobacteria bacterium OK006] >emb
| 1354 | 0.0e+00 |
| WP_082417477.1 | MULTISPECIES: potassium channel family protein [unclassified...
| 1354 | 0.0e+00 |
| WP_211179945.1 | NAD-binding protein [Streptomyces sp. RLA2-12]
| 1350 | 0.0e+00 |
| WP_143602326.1 | MULTISPECIES: potassium channel family protein [unclassified...
| 1350 | 0.0e+00 |
| WP_179436503.1 | MULTISPECIES: potassium channel family protein [unclassified...
| 1334 | 0.0e+00 |
| PBC97615.1 | voltage-gated potassium channel [Streptomyces sp. Ag82_O1-15] >em...
| 1334 | 0.0e+00 |
| WP_128377567.1 | potassium channel family protein [Streptomyces cavernae]
| 1312 | 1.1e-179 |
| WP_093834706.1 | potassium channel protein [Streptomyces sp. SolWspMP-5a-2] >...
| 1308 | 4.7e-179 |
| SCE41982.1 | voltage-gated potassium channel [Streptomyces sp. SolWspMP-5a-2]
| 1308 | 4.8e-179 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4673 | Seems to have a cleavable N-term signal seq.
|