| ID | SAVERM_4377
| Type | CDS
|
| From | 5357527
| nt length | 978
|
| To | 5358504
| aa length | 325
|
| Gene | bkdG
| pI | 5.15
|
| Definition | putative branched-chain alpha keto acid dehydrogenase E1 beta subunit
| M.W (Da) | 35503
|
| Note | PF02779: Transketolase, pyridine binding domain
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of lipids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3816 putative branched-chain alpha keto acid dehydrogenase E1 beta subunit | 612 | 0.0e+00
|
| sgr | SGR_3766 putative branched-chain alpha keto acid dehydrogenase E1 beta subunit | 593 | 0.0e+00
|
| sam | SAM23877_3842 Pyruvate dehydrogenase E1 component subunit beta | 599 | 0.0e+00
|
| scab | SCAB45171 putative branched-chain alpha keto acid dehydrogenase E1 beta subunit | 606 | 0.0e+00
|
| sace | SACE_7295 pyruvate dehydrogenase E1 component beta subunit | 474 | 3.0e-170
|
| nfar | nfa10220 branched-chain alpha-keto acid dehydrogenase component | 455 | 2.7e-129
|
| bsub | BG10208 pdhB, aceB; pyruvate dehydrogenase E1 component, beta subunit [EC:1.2.4.1] | 274 | 4.5e-75
|
| paer | PA2248 [gene=bkdA2] [prot=2-oxoisovalerate dehydrogenase (beta subunit)] [comment=PA2248] | 281 | 4.4e-77
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Transket_pyr | 1 | Transketolase, pyrimidine binding domain | 4-178 | 165.0 | 1.2e-48
|
| Transketolase_C | 1 | Transketolase, C-terminal domain | 195-314 | 131.5 | 1.4e-38
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_107102403.1 | alpha-ketoacid dehydrogenase subunit beta [Streptomyces phae...
| 1599 | 0.0e+00 |
| WP_143641408.1 | MULTISPECIES: alpha-ketoacid dehydrogenase subunit beta [Str...
| 1599 | 0.0e+00 |
| WP_151477202.1 | alpha-ketoacid dehydrogenase subunit beta [Streptomyces albi...
| 1593 | 0.0e+00 |
| WP_059130371.1 | MULTISPECIES: alpha-ketoacid dehydrogenase subunit beta [unc...
| 1590 | 0.0e+00 |
| WP_190192931.1 | alpha-ketoacid dehydrogenase subunit beta [Streptomyces minu...
| 1584 | 0.0e+00 |
| WP_234847374.1 | alpha-ketoacid dehydrogenase subunit beta [Streptomyces indi...
| 1580 | 0.0e+00 |
| WP_217455189.1 | alpha-ketoacid dehydrogenase subunit beta [Streptomyces sp. ...
| 1580 | 0.0e+00 |
| WP_055492238.1 | alpha-ketoacid dehydrogenase subunit beta [Streptomyces sp. ...
| 1579 | 0.0e+00 |
| WP_030952986.1 | MULTISPECIES: alpha-ketoacid dehydrogenase subunit beta [Str...
| 1579 | 0.0e+00 |
| WP_062928023.1 | MULTISPECIES: alpha-ketoacid dehydrogenase subunit beta [Str...
| 1578 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0945 | Seems to have no N-terminal signal seq.
|