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IDSAVERM_4425 TypeCDS
From5410841 nt length438
To5410404 aa length145
Genesig38 pI11.96
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)15792
NotePF08281: Sigma-70, region 4 AseI frg.H
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
scabSCAB44631 putative RNA polymerase sigma factor1242.0e-37

*scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 485-13559.32e-16

Sigma70_r41Sigma-70, region 488-13545.05.3e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_162625180.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ca... 1611.7e-11
AWW43220.1 SigE family RNA polymerase sigma factor [Streptomyces cadmiisoli] 1612.2e-11
WP_063797430.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1602.2e-11
WP_237529489.1 hypothetical protein [Streptomyces sp. SID5469] 1479.5e-10
WP_071370153.1 hypothetical protein [Streptomyces sp. MUSC 14] >gb 1305.3e-07
WP_055520268.1 SigE family RNA polymerase sigma factor, partial [Streptomyc... 1184.5e-05
WP_067299303.1 hypothetical protein [Streptomyces griseochromogenes] >gb 1164.8e-05
WP_152789227.1 SigE family RNA polymerase sigma factor, partial [Streptomyc... 1185.2e-05
WP_086752784.1 SigE family RNA polymerase sigma factor, partial [Streptomyc... 1175.6e-05
WP_046916917.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 1175.7e-05

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1875 Seems to have no N-terminal signal seq.