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IDSAVERM_4427 TypeCDS
From5411790 nt length528
To5412317 aa length175
Genesig39 pI8.53
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)19627
NotePF08281: Sigma-70, region 4 AseI frg.H
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO3709 putative ECF sigma factor1863.0e-61
sgrSGR_3223 putative RNA polymerase ECF-subfamily sigma factor1632.0e-52
scabSCAB44601 putative RNA polymerase sigma factor3014.0e-107

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4106-15858.05e-16

Sigma70_r21Sigma-70 region 221-8451.56e-14

Sigma70_r41Sigma-70, region 4111-15830.51.8e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_234512512.1 SigE family RNA polymerase sigma factor [Streptomyces glomer... 5389.4e-68
CBG71522.1 putative sigma factor [Streptomyces scabiei 87.22] 5311.5e-66
WP_005483199.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 5291.8e-66
GGN65608.1 RNA polymerase sigma24 factor [Streptomyces albiflavescens] 5294.2e-66
WP_046916920.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 5265.6e-66
WP_131568418.1 SigE family RNA polymerase sigma factor [Streptomyces sp. KM... 5257.2e-66
WP_055511247.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 5258.7e-66
WP_141569564.1 SigE family RNA polymerase sigma factor [Streptomyces ipomoe... 5258.7e-66
WP_009340189.1 SigE family RNA polymerase sigma factor [Streptomyces ipomoe... 5258.7e-66
WP_210881565.1 SigE family RNA polymerase sigma factor [Streptomyces sp. BH... 5259.3e-66

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2381 Seems to have no N-terminal signal seq.