| ID | SAVERM_4517
| Type | CDS
|
| From | 5519662
| nt length | 1197
|
| To | 5518466
| aa length | 398
|
| Gene | dapC
| pI | 4.9
|
| Definition | putative N-succinyldiaminopimelate aminotransferase
| M.W (Da) | 43207
|
| Note | PF00155: Aminotransferase class I and II
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3658 putative aspartate aminotransferase | 675 | 0.0e+00
|
| sgr | SGR_3424 putative aminotransferase | 559 | 0.0e+00
|
| sam | SAM23877_3963 putative N-succinyldiaminopimelate aminotransferase DapC | 679 | 0.0e+00
|
| scab | SCAB42271 putative N-succinyldiaminopimelate aminotransferase | 672 | 0.0e+00
|
| sace | SACE_6995 N-succinyldiaminopimelate aminotransferase | 449 | 1.0e-158
|
| nfar | nfa6260 aminotransferase | 425 | 3.0e-120
|
| mtub | gi|15607998 hypothetical protein Rv0858c [Mycobacterium tuberculosis H37Rv] | 419 | 1.3e-118
|
| cglu | gi|19552041 COG0436:PLP-dependent aminotransferases [Corynebacterium glutamicum] | 363 | 5.8e-102
|
| ecoli | gi|16128583 putative aminotransferase [Escherichia coli K12] | 276 | 2.2e-75
|
| paer | PA3798 [gene=PA3798] [prot=probable aminotransferase] [comment=PA3798] | 282 | 4.3e-77
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Aminotran_1_2 | 1 | Aminotransferase class I and II | 36-393 | 229.6 | 5.9e-68
|
| Aminotran_5 | 1 | Aminotransferase class-V | 94-213 | 39.2 | 3.8e-10
|
| Cys_Met_Meta_PP | 1 | Cys/Met metabolism PLP-dependent enzyme | 99-214 | 28.1 | 6.4e-07
|
| DegT_DnrJ_EryC1 | 1 | DegT/DnrJ/EryC1/StrS aminotransferase family | 97-264 | 22.6 | 5.4e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_147994780.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1814 | 0.0e+00 |
| WP_185012260.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1802 | 0.0e+00 |
| WP_059133527.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1797 | 0.0e+00 |
|
| 1794 | 0.0e+00 |
| WP_210585130.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1793 | 0.0e+00 |
| WP_220293313.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1792 | 0.0e+00 |
| WP_184909553.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1789 | 0.0e+00 |
| WP_030942128.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1786 | 0.0e+00 |
| WP_217209953.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1786 | 0.0e+00 |
| WP_030617341.1 | pyridoxal phosphate-dependent aminotransferase [Streptomyces...
| 1785 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1468 | Seems to have no N-terminal signal seq.
|