| ID | SAVERM_4519
| Type | CDS
|
| From | 5521235
| nt length | 1647
|
| To | 5522881
| aa length | 548
|
| Gene | speE
| pI | 9.71
|
| Definition | putative spermidine synthase
| M.W (Da) | 57726
|
| Note | PF01564: Spermine/spermidine synthase
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3655 putative spermidine synthase | 734 | 0.0e+00
|
| sgr | SGR_3422 putative spermidine synthase | 627 | 0.0e+00
|
| sam | SAM23877_3965 putative spermidine synthase 2 | 729 | 0.0e+00
|
| scab | SCAB42201 putative spermidine synthase | 742 | 0.0e+00
|
| sace | SACE_0456 putative spermidine synthase | 447 | 3.0e-153
|
| nfar | nfa34940 spermidine synthase | 472 | 3.1e-134
|
| mtub | gi|57117003 spermidine synthase [Mycobacterium tuberculosis H37Rv] | 355 | 5.6e-99
|
| cglu | gi|19553895 COG0421:Spermidine synthase [Corynebacterium glutamicum] | 301 | 5.1e-83
|
| bsub | BG12460 speE, ywhF; spermidine synthase [EC:2.5.1.16] | 84 | 1.6e-17
|
| ecoli | gi|16128114 spermidine synthase [Escherichia coli K12] | 102 | 6.5e-23
|
| paer | PA1687 [gene=speE] [prot=spermidine synthase] [comment=PA1687] | 95 | 1.4e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Spermine_synth | 1 | Spermine/spermidine synthase domain | 306-453 | 98.5 | 2.8e-28
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498274.1 | polyamine aminopropyltransferase [Streptomyces sp. SID5469]
| 2107 | 0.0e+00 |
| WP_143602423.1 | MULTISPECIES: polyamine aminopropyltransferase [unclassified...
| 1715 | 0.0e+00 |
| WP_211179978.1 | polyamine aminopropyltransferase [Streptomyces sp. RLA2-12]
| 1710 | 0.0e+00 |
| QIY97301.1 | polyamine aminopropyltransferase [Streptomyces sp. S1D4-11]
| 1710 | 0.0e+00 |
| WP_067374130.1 | polyamine aminopropyltransferase [Streptomyces olivochromoge...
| 1709 | 0.0e+00 |
| WP_143627467.1 | MULTISPECIES: polyamine aminopropyltransferase [unclassified...
| 1709 | 0.0e+00 |
| WP_143655406.1 | polyamine aminopropyltransferase [Streptomyces sp. S1A1-7] >...
| 1707 | 0.0e+00 |
| WP_126273349.1 | polyamine aminopropyltransferase [Streptomyces aquilus] >gb
| 1701 | 0.0e+00 |
| WP_168493975.1 | MULTISPECIES: polyamine aminopropyltransferase [Streptomyces...
| 1700 | 0.0e+00 |
| WP_097285595.1 | polyamine aminopropyltransferase [Streptomyces sp. OK228] >e...
| 1699 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4906 | Seems to have no N-terminal signal seq.
|