| ID | SAVERM_4557
| Type | CDS
|
| From | 5565399
| nt length | 600
|
| To | 5565998
| aa length | 199
|
| Gene | recR
| pI | 4.99
|
| Definition | putative recombination and repair protein
| M.W (Da) | 21826
|
| Note | PF01751: Toprim domain
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3618 putative recomination protein | 380 | 2.0e-137
|
| sgr | SGR_3377 putative recombination and repair protein | 369 | 5.0e-133
|
| sam | SAM23877_4001 gap repair protein | 383 | 1.0e-138
|
| scab | SCAB41781 putative recombination and repair protein | 378 | 1.0e-136
|
| sace | SACE_0255 putative recombination and repair protein | 272 | 7.0e-95
|
| nfar | nfa2950 recR recombination and repair protein | 283 | 9.4e-78
|
| mtub | gi|15610851 recombination protein RecR [Mycobacterium tuberculosis H37Rv] | 282 | 9.6e-78
|
| cglu | gi|19551495 COG0353:Recombinational DNA repair protein (RecF pathway) [Corynebacterium glutamicum] | 231 | 2.3e-62
|
| bsub | BG10085 recR, recM; DNA repair and genetic recombination protein | 234 | 2.6e-63
|
| ecoli | gi|16128456 recombination protein RecR [Escherichia coli K12] | 183 | 7.8e-48
|
| paer | PA1534 [gene=recR] [prot=recombination protein RecR] [comment=PA1534] | 180 | 9.0e-47
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Toprim_4 | 1 | Toprim domain | 79-170 | 92.2 | 2e-26
|
| RecR | 1 | RecR protein | 38-77 | 55.0 | 4e-15
|
| Toprim | 1 | Toprim domain | 80-161 | 40.9 | 1.7e-10
|
| HHH | 1 | Helix-hairpin-helix motif | 2-27 | 26.0 | 4.9e-06
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_030667861.1 | MULTISPECIES: recombination mediator RecR [Streptomyces]
| 1015 | 1.3e-139 |
| WP_020124031.1 | MULTISPECIES: recombination mediator RecR [Streptomyces] >gb...
| 1013 | 3.2e-139 |
| WP_055613476.1 | MULTISPECIES: recombination mediator RecR [Streptomyces] >gb...
| 1012 | 3.5e-139 |
| WP_086772885.1 | MULTISPECIES: recombination mediator RecR [Streptomyces] >gb...
| 1012 | 3.7e-139 |
| WP_081218503.1 | MULTISPECIES: recombination mediator RecR [unclassified Stre...
| 1012 | 4.4e-139 |
| WP_067374043.1 | recombination mediator RecR [Streptomyces olivochromogenes] ...
| 1012 | 4.4e-139 |
| WP_107018120.1 | MULTISPECIES: recombination mediator RecR [Streptomyces] >lc...
| 1012 | 4.4e-139 |
| WP_018529216.1 | MULTISPECIES: recombination mediator RecR [Streptomyces] >gb...
| 1012 | 4.5e-139 |
| WP_164424767.1 | recombination mediator RecR [Streptomyces sp. SID13726] >gb
| 1011 | 5.0e-139 |
| WP_149512236.1 | recombination mediator RecR [Streptomyces apricus] >lcl
| 1011 | 5.7e-139 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4007 | Seems to have no N-terminal signal seq.
|