-- | --

IDSAVERM_4561 TypeCDS
From5569855 nt length576
To5570430 aa length191
Genesig40 pI9.67
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)21174
Notesimilar to SCO3613, PF08281: Sigma-70, region 4 AseI frg.L
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO3613 putative RNA polymerase sigma factor3433.0e-123
sgrSGR_3370 putative RNA polymerase ECF-subfamily sigma factor3372.0e-120
samSAM23877_4007 putative RNA polymerase sigma factor RfaY3508.0e-126
scabSCAB41621 putative RNA polymerase sigma factor3386.0e-121
saceSACE_1517 RNA polymerase sigma factor1303.0e-39
paerPA2387 [gene=PA2387] [prot=probable sigma-70 factor, ECF subfamily] [comment=PA2387]514.5e-08

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; paer, Pseudomonas aeruginosa;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4131-18347.21.2e-12

Sigma70_r41Sigma-70, region 4136-18443.12.1e-11

Sigma70_r21Sigma-70 region 239-10343.12.5e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_210881722.1 SigE family RNA polymerase sigma factor [Streptomyces sp. BH... 7641.3e-101
GGR55473.1 RNA polymerase sigma factor [Streptomyces parvulus] 7613.5e-101
WP_114528551.1 SigE family RNA polymerase sigma factor [Streptomyces parvul... 7613.5e-101
WP_064729026.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7614.6e-101
WP_173894454.1 SigE family RNA polymerase sigma factor [Streptomyces sp. 8P... 7598.3e-101
WP_107018124.1 SigE family RNA polymerase sigma factor [Streptomyces diosco... 7629.8e-101
WP_161332525.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 7571.6e-100
WP_099504829.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7601.9e-100
WP_095751680.1 SigE family RNA polymerase sigma factor [Streptomyces sp. SA... 7562.0e-100
WP_124440373.1 SigE family RNA polymerase sigma factor [Streptomyces sp. NL... 7554.4e-100

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3823 Seems to have no N-terminal signal seq.