| ID | SAVERM_4637
| Type | CDS
|
| From | 5665315
| nt length | 690
|
| To | 5664626
| aa length | 229
|
| Gene | clpX1
| pI | 9.1
|
| Definition | putative ClpX protein
| M.W (Da) | 23874
|
| Note | PF02861: Clp amino terminal domain
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | adaptation to atypical conditions
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3433 hypothetical protein | 276 | 4.0e-95
|
| sgr | SGR_1254 putative ClpX protein | 257 | 2.0e-87
|
| sam | SAM23877_4130 hypothetical protein | 268 | 1.0e-91
|
| scab | SCAB40081 putative Clp protease subunit | 276 | 3.0e-95
|
| sace | SACE_3304 putative Clp protease subunit | 255 | 4.0e-87
|
| nfar | nfa52770 clpX2 Clp protease subunit | 229 | 2.0e-61
|
| mtub | gi|57117011 POSSIBLE ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPC2 [Mycobacterium tuberculosis H37Rv] | 220 | 5.5e-59
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Clp_N | 2 | Clp amino terminal domain, pathogenicity island component | 75-126, 151-181 | 63.7 | 1.2e-17
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| NEE13684.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces sp. ...
| 632 | 3.9e-80 |
| WP_189593523.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 630 | 8.6e-80 |
| WP_189188572.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 628 | 1.9e-79 |
| WP_031108097.1 | Clp protease [Streptomyces sp. NRRL S-146]
| 627 | 2.5e-79 |
| WP_221758004.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 623 | 1.0e-78 |
| KMS86409.1 | Clp protease [Streptomyces regensis]
| 622 | 2.7e-78 |
| WP_053211874.1 | Clp protease [Streptomyces antibioticus] >gb
| 621 | 3.2e-78 |
| WP_166001038.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 620 | 3.7e-78 |
| WP_031092085.1 | MULTISPECIES: Clp protease [unclassified Streptomyces] >gb
| 620 | 3.9e-78 |
| WP_030846013.1 | Clp protease [Streptomyces sp. NRRL S-475]
| 613 | 3.2e-77 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3145 | Seems to have no N-terminal signal seq.
|