| ID | SAVERM_4643
| Type | CDS
|
| From | 5668835
| nt length | 165
|
| To | 5668999
| aa length | 54
|
| Gene | rpmG1
| pI | 11.87
|
| Definition | putative ribosomal protein L33
| M.W (Da) | 6561
|
| Note | PF00471: Ribosomal protein L33
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3428 putative 50S ribosomal protein L33 | 101 | 1.0e-31
|
| sgr | SGR_546 putative 50S ribosomal protein L33 | 105 | 3.0e-33
|
| sam | SAM23877_4137 50S ribosomal subunit protein L33 | 102 | 4.0e-32
|
| scab | SCAB40001 putative ribosomal protein L33 | 99 | 7.0e-31
|
| sace | SACE_0753 50S ribosomal protein L33 | 92 | 3.0e-28
|
| nfar | nfa49760 rpmG ribosomal protein L33 | 97 | 1.8e-22
|
| mtub | gi|57116938 50S ribosomal protein L33 [Mycobacterium tuberculosis H37Rv] | 100 | 2.4e-23
|
| cglu | gi|19552094 COG0267:Ribosomal protein L33 [Corynebacterium glutamicum] | 95 | 3.6e-22
|
| ecoli | gi|16131507 50S ribosomal protein L33 [Escherichia coli K12] | 55 | 5.2e-10
|
| paer | PA5315 [gene=rpmG] [prot=50S ribosomal protein L33] [comment=PA5315] | 55 | 6.3e-10
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L33 | 1 | Ribosomal protein L33 | 9-54 | 57.7 | 1.1e-15
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_046260352.1 | MULTISPECIES: 50S ribosomal protein L33 [Streptomyces] >gb
| 273 | 5.8e-31 |
| WP_006376523.1 | MULTISPECIES: 50S ribosomal protein L33 [Streptomyces] >gb
| 271 | 9.8e-31 |
| WP_189105971.1 | 50S ribosomal protein L33 [Streptomyces camponoticapitis] >d...
| 269 | 2.5e-30 |
| WP_067028123.1 | 50S ribosomal protein L33 [Streptomyces dysideae] >gb
| 268 | 2.6e-30 |
| WP_048587364.1 | 50S ribosomal protein L33 [Streptomyces viridochromogenes] >...
| 268 | 3.0e-30 |
| WP_073810990.1 | MULTISPECIES: 50S ribosomal protein L33 [Streptomyces] >lcl
| 268 | 3.2e-30 |
| NUS75136.1 | 50S ribosomal protein L33 [Streptomyces sp.]
| 268 | 3.4e-30 |
| WP_062750742.1 | MULTISPECIES: 50S ribosomal protein L33 [Streptomyces] >lcl
| 267 | 4.3e-30 |
| WP_212913619.1 | 50S ribosomal protein L33 [Streptomyces sp. TS71-3] >dbj
| 267 | 4.4e-30 |
| WP_015658813.1 | MULTISPECIES: 50S ribosomal protein L33 [Streptomyces] >gb
| 266 | 5.2e-30 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3710 | Seems to have no N-terminal signal seq.
|