| ID | SAVERM_4659
| Type | CDS
|
| From | 5682461
| nt length | 1020
|
| To | 5683480
| aa length | 339
|
| Gene |
| pI | 5.29
|
| Definition | putative membrane protein
| M.W (Da) | 37261
|
| Note | PF00597: DedA family
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3411 possible membrane protein | 276 | 1.0e-92
|
| sgr | SGR_4081 putative membrane protein | 316 | 2.0e-109
|
| sam | SAM23877_4152 putative membrane protein | 268 | 2.0e-89
|
| scab | SCAB39851 putative membrane protein | 387 | 1.0e-135
|
| sace | SACE_7186 uncharacterized membrane-associated protein-like | 228 | 5.0e-75
|
| nfar | nfa53840 hypothetical protein | 209 | 2.1e-55
|
| mtub | gi|15607505 POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] | 194 | 7.1e-51
|
| cglu | gi|19553639 COG0586:Uncharacterized membrane-associated protein [Corynebacterium glutamicum] | 218 | 2.5e-58
|
| bsub | BG12741 ybfM; similar to alkaline phosphatase | 68 | 6.8e-13
|
| ecoli | gi|16130252 putative integral membrane protein [Escherichia coli K12] | 167 | 9.3e-43
|
| paer | PA4029 [gene=PA4029] [prot=conserved hypothetical protein] [comment=PA4029] | 171 | 8.8e-44
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SNARE_assoc | 1 | SNARE associated Golgi protein | 41-168 | 78.5 | 5e-22
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498297.1 | VTT domain-containing protein [Streptomyces sp. SID5469]
| 1191 | 6.3e-162 |
| WP_081218599.1 | VTT domain-containing protein [Streptomyces sp. M41(2017)] >...
| 1050 | 1.5e-139 |
| WP_103552694.1 | DedA family protein [Streptomyces populi] >gb
| 1006 | 1.3e-132 |
| WP_239155503.1 | VTT domain-containing protein [Streptomyces sp. SID14446]
| 998 | 1.2e-131 |
| WP_151472543.1 | DedA family protein [Streptomyces triticiradicis] >lcl
| 988 | 1.0e-129 |
| WP_095935711.1 | VTT domain-containing protein [Streptomyces sp. Tue6028] >gb...
| 968 | 1.0e-127 |
| WP_028799080.1 | VTT domain-containing protein [Streptomyces sp. 142MFCol3.1]
| 966 | 1.1e-127 |
| WP_189188552.1 | VTT domain-containing protein [Streptomyces albiflavescens] ...
| 963 | 2.6e-127 |
| WP_168529309.1 | VTT domain-containing protein [Streptomyces sp. RPA4-2] >gb
| 935 | 1.8e-122 |
| WP_043442585.1 | VTT domain-containing protein [Streptomyces nodosus] >gb
| 933 | 2.6e-122 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5776 | Seems to have no N-terminal signal seq.
|