| ID | SAVERM_4662
| Type | CDS
|
| From | 5686245
| nt length | 1386
|
| To | 5687630
| aa length | 461
|
| Gene | dacE
| pI | 8.67
|
| Definition | putative D-alanyl-D-alanine carboxypeptidase
| M.W (Da) | 46900
|
| Note | PF00768: D-alanyl-D-alanine carboxypeptidase
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | cell wall
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3408 hypothetical protein | 455 | 8.0e-159
|
| sgr | SGR_4084 putative D-alanyl-D-alanine carboxypeptidase | 431 | 7.0e-149
|
| sam | SAM23877_4155 D-alanyl-D-alanine carboxypeptidase | 521 | 0.0e+00
|
| scab | SCAB39821 putative D-alanyl-D-alanine carboxypeptidase | 476 | 1.0e-165
|
| sace | SACE_0392 hypothetical protein | 221 | 1.0e-63
|
| nfar | nfa3860 penicillin binding protein | 224 | 9.3e-60
|
| mtub | gi|15610763 hypothetical protein Rv3627c [Mycobacterium tuberculosis H37Rv] | 225 | 5.5e-60
|
| cglu | gi|19553893 COG2027:D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Corynebacterium glutamicum] | 144 | 8.6e-36
|
| bsub | BG10969 dacC, pbp; penicillin binding protein | 78 | 5.5e-16
|
| ecoli | gi|16131072 D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4 [Escherichia coli K12] | 78 | 8.2e-16
|
| paer | PA3047 [gene=PA3047] [prot=probable D-alanyl-D-alanine carboxypeptidase] [comment=PA3047] | 52 | 6.6e-08
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Peptidase_S13 | 2 | D-Ala-D-Ala carboxypeptidase 3 (S13) family | 77-232, 237-454 | 248.2 | 1.3e-73
|
| Peptidase_S11 | 1 | D-alanyl-D-alanine carboxypeptidase | 91-133 | 35.3 | 7.1e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_037649242.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endop...
| 1828 | 0.0e+00 |
| WP_155058099.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endop...
| 1331 | 5.8e-178 |
| WP_075032451.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endop...
| 1317 | 7.3e-176 |
| GHD59904.1 | D-alanyl-D-alanine carboxypeptidase [Streptomyces mirabilis]
| 1311 | 2.9e-175 |
| WP_190171222.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endop...
| 1308 | 1.7e-174 |
| GAX53215.1 | D-alanyl-D-alanine carboxypeptidase [Streptomyces olivochromogen...
| 1301 | 1.9e-174 |
| WP_217569195.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endop...
| 1306 | 2.5e-174 |
| WP_067373729.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endop...
| 1300 | 2.2e-173 |
| WP_143602504.1 | MULTISPECIES: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D...
| 1296 | 9.6e-173 |
| WP_211180000.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endop...
| 1296 | 1.1e-172 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4932 | Seems to have no N-terminal signal seq.
|