| ID | SAVERM_4697
| Type | CDS
|
| From | 5721983
| nt length | 2526
|
| To | 5724508
| aa length | 841
|
| Gene | clpC2
| pI | 6.03
|
| Definition | putative ATP-dependent Clp protease
| M.W (Da) | 93024
|
| Note | PF07724: ATPase family associated with various cellular activities (AAA)
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | adaptation to atypical conditions
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3373 putative Clp-family ATP-binding protease | 1654 | 0.0e+00
|
| sgr | SGR_4118 putative ATP-dependent Clp protease | 1620 | 0.0e+00
|
| sam | SAM23877_4191 ATP-dependent Clp protease ATP-binding subunit ClpC1 | 1656 | 0.0e+00
|
| scab | SCAB39491 putative ATP-dependent Clp protease | 1652 | 0.0e+00
|
| sace | SACE_0414 putative ATP-dependent Clp protease | 1412 | 0.0e+00
|
| nfar | nfa4150 Clp protease | 1342 | 0.0e+00
|
| mtub | gi|57117131 PROBABLE ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPC1 [Mycobacterium tuberculosis H37Rv] | 1329 | 0.0e+00
|
| cglu | gi|19553872 COG0542:ATPases with chaperone activity, ATP-binding subunit [Corynebacterium glutamicum] | 1246 | 0.0e+00
|
| bsub | BG10148 clpC, mecB; class III stress response-related ATPase | 988 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AAA_2 | 1 | AAA domain (Cdc48 subfamily) | 541-712 | 190.7 | 2e-56
|
| Clp_N | 2 | Clp amino terminal domain, pathogenicity island component | 16-68, 93-142 | 126.7 | 2.4e-37
|
| ClpB_D2-small | 1 | C-terminal, D2-small domain, of ClpB protein | 719-798 | 93.5 | 5.7e-27
|
| AAA | 2 | ATPase family associated with various cellular activities (AAA) | 209-329, 546-664 | 82.3 | 3.8e-23
|
| AAA_5 | 1 | AAA domain (dynein-related subfamily) | 545-665 | 68.0 | 7.3e-19
|
| Sigma54_activat | 1 | Sigma-54 interaction domain | 543-663 | 36.1 | 4.5e-09
|
| TniB | 1 | Bacterial TniB protein | 192-345 | 34.5 | 1.1e-08
|
| UVR | 1 | UvrB/uvrC motif | 421-453 | 30.5 | 1.9e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_143629531.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 3871 | 0.0e+00 |
| WP_030251457.1 | MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit...
| 3869 | 0.0e+00 |
| WP_055491973.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 3867 | 0.0e+00 |
| WP_037681136.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 3867 | 0.0e+00 |
| WP_138049975.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 3866 | 0.0e+00 |
| WP_059193963.1 | MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit...
| 3865 | 0.0e+00 |
| WP_010048831.1 | MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit...
| 3865 | 0.0e+00 |
| WP_067256359.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 3864 | 0.0e+00 |
| WP_003992017.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 3861 | 0.0e+00 |
| WP_127832593.1 | ATP-dependent Clp protease ATP-binding subunit [Streptomyces...
| 3861 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1314 | Seems to have no N-terminal signal seq.
|