| ID | SAVERM_4710
| Type | CDS
|
| From | 5740775
| nt length | 1410
|
| To | 5739366
| aa length | 469
|
| Gene | radA
| pI | 8.15
|
| Definition | putative DNA repair protein
| M.W (Da) | 49852
|
| Note | PF03796: DnaB-like helicase C terminal domain
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3351 putative DNA repair protein | 832 | 0.0e+00
|
| sgr | SGR_4129 putative DNA repair protein | 808 | 0.0e+00
|
| sam | SAM23877_4210 DNA repair protein RadA-like protein | 858 | 0.0e+00
|
| scab | SCAB39361 putative DNA repair protein | 847 | 0.0e+00
|
| sace | SACE_0436 DNA repair protein | 522 | 0.0e+00
|
| nfar | nfa4320 sms DNA repair protein | 525 | 2.6e-150
|
| mtub | gi|15610721 DNA REPAIR PROTEIN RADA (DNA REPAIR PROTEIN SMS) [Mycobacterium tuberculosis H37Rv] | 477 | 8.2e-136
|
| cglu | gi|19553862 COG1066:Predicted ATP-dependent serine protease [Corynebacterium glutamicum] | 437 | 3.8e-124
|
| bsub | BG10149 sms, yacJ; DNA repair protein homolog | 379 | 2.0e-106
|
| ecoli | gi|16132206 probable ATP-dependent protease [Escherichia coli K12] | 351 | 6.7e-98
|
| paer | PA4609 [gene=radA] [prot=DNA repair protein RadA] [comment=PA4609] | 375 | 6.0e-105
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ATPase | 1 | KaiC | 74-140 | 56.1 | 3.1e-15
|
| AAA_25 | 1 | AAA domain | 78-222 | 50.4 | 1.8e-13
|
| ChlI | 1 | Subunit ChlI of Mg-chelatase | 370-429 | 37.3 | 1.9e-09
|
| Lon_C | 1 | Lon protease (S16) C-terminal proteolytic domain | 366-430 | 30.5 | 2.3e-07
|
| DnaB_C | 1 | DnaB-like helicase C terminal domain | 74-138 | 28.0 | 1.2e-06
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1341 | Seems to have no N-terminal signal seq.
|