| ID | SAVERM_4801
| Type | CDS
|
| From | 5841945
| nt length | 1077
|
| To | 5843021
| aa length | 358
|
| Gene | ccsB
| pI | 9.57
|
| Definition | putative cytochrome C assembly protein
| M.W (Da) | 38578
|
| Note | PF01578: Cytochrome C assembly protein
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | membrane bioenergetics
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4475 putative cytochrome biogenesis related protein | 629 | 0.0e+00
|
| sgr | SGR_4199 putative cytochrome C assembly protein | 578 | 0.0e+00
|
| sam | SAM23877_4293 putative cytochrome biogenesis related protein | 618 | 0.0e+00
|
| scab | SCAB38631 putative cytochrome C assembly protein | 655 | 0.0e+00
|
| sace | SACE_6930 cytochrome c assembly membrane protein | 211 | 2.0e-66
|
| nfar | nfa51550 cytochrome c assembly protein | 212 | 4.6e-56
|
| mtub | gi|57116751 POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCSA [Mycobacterium tuberculosis H37Rv] | 203 | 1.6e-53
|
| cglu | gi|19551687 COG4131:ABC-type uncharacterized transport system, permease component [Corynebacterium glutamicum] | 187 | 6.5e-49
|
| bsub | BG10533 resC, ypxC; essential protein similar to cytochrome c biogenesis protein | 107 | 1.1e-24
|
| ecoli | gi|16130133 cytochrome c-type biogenesis protein [Escherichia coli K12] | 43 | 1.6e-05
|
| paer | PA1480 [gene=ccmF] [prot=cytochrome C-type biogenesis protein CcmF] [comment=PA1480] | 45 | 7.8e-06
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Cytochrom_C_asm | 1 | Cytochrome C assembly protein | 137-350 | 152.7 | 1.1e-44
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_190169864.1 | c-type cytochrome biogenesis protein CcsB [Streptomyces mira...
| 1535 | 0.0e+00 |
| WP_177324081.1 | c-type cytochrome biogenesis protein CcsB [Streptomyces mira...
| 1535 | 0.0e+00 |
| WP_179436475.1 | MULTISPECIES: c-type cytochrome biogenesis protein CcsB [unc...
| 1535 | 0.0e+00 |
| WP_180292905.1 | c-type cytochrome biogenesis protein CcsB [Streptomyces sp. ...
| 1534 | 0.0e+00 |
| WP_201264339.1 | c-type cytochrome biogenesis protein CcsB [Streptomyces oliv...
| 1532 | 0.0e+00 |
| KUN46792.1 | cytochrome C biogenesis protein [Streptomyces olivochromogenes]
| 1529 | 0.0e+00 |
| QIZ01852.1 | c-type cytochrome biogenesis protein CcsB [Streptomyces sp. S1D4-...
| 1529 | 0.0e+00 |
| WP_181650424.1 | MULTISPECIES: c-type cytochrome biogenesis protein CcsB [unc...
| 1527 | 0.0e+00 |
| WP_179858245.1 | MULTISPECIES: c-type cytochrome biogenesis protein CcsB [unc...
| 1526 | 0.0e+00 |
| WP_211118778.1 | MULTISPECIES: c-type cytochrome biogenesis protein CcsB [Str...
| 1525 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.3463 | Seems to have a cleavable N-term signal seq.
|