| ID | SAVERM_4820
| Type | CDS
|
| From | 5860982
| nt length | 204
|
| To | 5860779
| aa length | 67
|
| Gene | cspD6
| pI | 4.48
|
| Definition | putative cold shock protein
| M.W (Da) | 7119
|
| Note | PF00313: 'Cold-shock' DNA-binding domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | adaptation to atypical conditions
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4505 scoF2 cold shock protein | 133 | 6.0e-44
|
| sgr | SGR_3002 putative cold shock protein | 131 | 3.0e-43
|
| sam | SAM23877_4323 cold shock protein-like protein | 133 | 5.0e-44
|
| scab | SCAB38231 putative cold shock protein | 134 | 5.0e-44
|
| sace | SACE_2658 cold-shock DNA-binding domain protein | 112 | 1.0e-35
|
| mtub | gi|15610784 PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium tuberculosis H37Rv] | 95 | 7.6e-22
|
| cglu | gi|19551424 COG1278:Cold shock proteins [Corynebacterium glutamicum] | 95 | 2.7e-22
|
| ecoli | gi|16128848 DNA replication inhibitor, nucleic acid-binding domain [Escherichia coli K12] | 88 | 5.5e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| CSD | 1 | 'Cold-shock' DNA-binding domain | 3-66 | 108.7 | 8.6e-32
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3095 | Seems to have no N-terminal signal seq.
|