| ID | SAVERM_4911
| Type | CDS
|
| From | 5966625
| nt length | 726
|
| To | 5967350
| aa length | 241
|
| Gene | rplA
| pI | 10.23
|
| Definition | putative ribosomal protein L1
| M.W (Da) | 25828
|
| Note | PF00687: Ribosomal protein L1p/L10e family
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4649 50S ribosomal protein L1 | 446 | 6.0e-162
|
| sgr | SGR_2873 50S ribosomal protein L1 | 421 | 3.0e-152
|
| sam | SAM23877_4468 50S ribosomal subunit protein L1 | 427 | 2.0e-154
|
| scab | SCAB37231 putative ribosomal protein L1 | 446 | 3.0e-162
|
| sace | SACE_6870 50S ribosomal protein L1 | 325 | 2.0e-114
|
| nfar | nfa51140 rplA ribosomal protein L1 | 354 | 4.4e-99
|
| mtub | gi|15607781 50S ribosomal protein L1 [Mycobacterium tuberculosis H37Rv] | 345 | 1.2e-96
|
| cglu | gi|19551720 COG0081:Ribosomal protein L1 [Corynebacterium glutamicum] | 308 | 1.2e-85
|
| bsub | BG10164 rplA; 50S ribosomal protein L1 | 273 | 8.8e-75
|
| ecoli | gi|16131814 50S ribosomal protein L1 [Escherichia coli K12] | 235 | 1.8e-63
|
| paer | PA4273 [gene=rplA] [prot=50S ribosomal protein L1] [comment=PA4273] | 233 | 1.2e-62
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L1 | 1 | Ribosomal protein L1p/L10e family | 31-220 | 177.0 | 3.5e-52
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189782196.1 | 50S ribosomal protein L1 [Streptomyces capitiformicae] >dbj
| 995 | 3.9e-135 |
| WP_059300000.1 | 50S ribosomal protein L1 [Streptomyces canus]
| 995 | 4.4e-135 |
| WP_019055479.1 | 50S ribosomal protein L1 [Streptomyces prunicolor]
| 994 | 4.9e-135 |
| WP_076975834.1 | MULTISPECIES: 50S ribosomal protein L1 [unclassified Strepto...
| 994 | 5.4e-135 |
| WP_064729326.1 | MULTISPECIES: 50S ribosomal protein L1 [Streptomyces] >gb
| 993 | 7.5e-135 |
| WP_149825935.1 | 50S ribosomal protein L1 [Streptomyces tailanensis]
| 993 | 9.1e-135 |
| WP_190037492.1 | 50S ribosomal protein L1 [Streptomyces fructofermentans] >db...
| 992 | 9.6e-135 |
| WP_020118519.1 | MULTISPECIES: 50S ribosomal protein L1 [Streptomyces] >gb
| 992 | 1.2e-134 |
| WP_059079076.1 | 50S ribosomal protein L1 [Streptomyces scabiei] >lcl
| 991 | 1.5e-134 |
| WP_189311901.1 | 50S ribosomal protein L1 [Streptomyces brasiliensis] >dbj
| 991 | 1.7e-134 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2161 | Seems to have no N-terminal signal seq.
|