| ID | SAVERM_4915
| Type | CDS
|
| From | 5973224
| nt length | 3900
|
| To | 5977123
| aa length | 1299
|
| Gene | rpoC
| pI | 7.17
|
| Definition | RNA polymerase beta prime subunit
| M.W (Da) | 145044
|
| Note | PF04997: RNA polymerase Rpb1, domain 1
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA elongation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4655 DNA-directed RNA polymerase beta' chain (fragment) | 2576 | 0.0e+00
|
| sgr | SGR_2868 putative RNA polymerase beta prime subunit | 2565 | 0.0e+00
|
| sam | SAM23877_4474 DNA-directed RNA polymerase subunit beta' | 2593 | 0.0e+00
|
| scab | SCAB37181 RNA polymerase beta prime subunit | 2608 | 0.0e+00
|
| sace | SACE_6853 DNA-directed RNA polymerase, beta' subunit | 1970 | 0.0e+00
|
| nfar | nfa50980 rpoC RNA polymerase beta' subunit | 1887 | 0.0e+00
|
| mtub | gi|15607808 DNA-directed RNA polymerase beta' subunit [Mycobacterium tuberculosis H37Rv] | 1858 | 0.0e+00
|
| cglu | gi|19551732 COG0086:DNA-directed RNA polymerase beta' subunit/160 kD subunit (split gene in archaea and Syn) [Corynebacterium glutamicum] | 1643 | 0.0e+00
|
| bsub | BG10729 rpoC; DNA-directed RNA polymerase beta' chain [EC:2.7.7.6] | 1098 | 0.0e+00
|
| ecoli | gi|16131818 DNA-directed RNA polymerase beta' subunit [Escherichia coli K12] | 810 | 0.0e+00
|
| paer | PA4269 [gene=rpoC] [prot=DNA-directed RNA polymerase beta* chain] [comment=PA4269] | 810 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RNA_pol_Rpb1_1 | 1 | RNA polymerase Rpb1, domain 1 | 7-417 | 275.5 | 5.3e-82
|
| RNA_pol_Rpb1_5 | 1 | RNA polymerase Rpb1, domain 5 | 838-1199 | 227.0 | 2.6e-67
|
| RNA_pol_Rpb1_2 | 2 | RNA polymerase Rpb1, domain 2 | 419-480, 468-560 | 133.2 | 9.5e-39
|
| RNA_pol_Rpb1_3 | 1 | RNA polymerase Rpb1, domain 3 | 564-731 | 82.0 | 4e-23
|
| RNA_pol_Rpb1_4 | 1 | RNA polymerase Rpb1, domain 4 | 760-824 | 53.1 | 2.4e-14
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_030930561.1 | DNA-directed RNA polymerase subunit beta' [Streptomyces sp. ...
| 6751 | 0.0e+00 |
| WP_123966942.1 | DNA-directed RNA polymerase subunit beta' [Streptomyces sp. ...
| 6739 | 0.0e+00 |
| WP_202498346.1 | DNA-directed RNA polymerase subunit beta' [Streptomyces sp. ...
| 6739 | 0.0e+00 |
| WP_142141933.1 | DNA-directed RNA polymerase subunit beta' [Streptomyces sp. ...
| 6731 | 0.0e+00 |
| WP_062664053.1 | MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Str...
| 6725 | 0.0e+00 |
| WP_108708253.1 | MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Str...
| 6725 | 0.0e+00 |
| WP_115507722.1 | MULTISPECIES: DNA-directed RNA polymerase subunit beta' [unc...
| 6720 | 0.0e+00 |
| WP_055622547.1 | DNA-directed RNA polymerase subunit beta' [Streptomyces sp. ...
| 6720 | 0.0e+00 |
| WP_030944750.1 | MULTISPECIES: DNA-directed RNA polymerase subunit beta' [unc...
| 6719 | 0.0e+00 |
| WP_126900985.1 | DNA-directed RNA polymerase subunit beta' [Streptomyces sp. ...
| 6718 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2698 | Seems to have no N-terminal signal seq.
|