| ID | SAVERM_4925
| Type | CDS
|
| From | 5987138
| nt length | 309
|
| To | 5987446
| aa length | 102
|
| Gene | rpsJ
| pI | 9.82
|
| Definition | putative ribosomal protein S10
| M.W (Da) | 11521
|
| Note | PF00338: Ribosomal protein S10p/S20e
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4701 30S ribosomal protein S10 | 207 | 4.0e-72
|
| sgr | SGR_2835 30S ribosomal protein S10 | 207 | 4.0e-72
|
| sam | SAM23877_4497 30S ribosomal subunit protein S10 | 207 | 4.0e-72
|
| scab | SCAB36951 putative ribosomal protein S10 | 207 | 4.0e-72
|
| sace | SACE_6837 30S ribosomal protein S10 | 188 | 1.0e-64
|
| nfar | nfa7320 rpsJ ribosomal protein S10 | 187 | 1.1e-49
|
| mtub | gi|15607840 30S ribosomal protein S10 [Mycobacterium tuberculosis H37Rv] | 186 | 2.0e-49
|
| cglu | gi|19551745 COG0051:Ribosomal protein S10 [Corynebacterium glutamicum] | 184 | 6.4e-49
|
| bsub | BG19008 rpsJ, tetA; 30S ribosomal protein S10 | 166 | 1.3e-43
|
| ecoli | gi|16131200 30S ribosomal protein S10 [Escherichia coli K12] | 132 | 3.4e-33
|
| paer | PA4264 [gene=rpsJ] [prot=30S ribosomal protein S10] [comment=PA4264] | 132 | 5.8e-33
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S10 | 1 | Ribosomal protein S10p/S20e | 7-101 | 125.5 | 7.2e-37
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| GGV49841.1 | 30S ribosomal protein S10 [Streptomyces pilosus]
| 528 | 2.9e-68 |
| AIA04316.1 | 30S ribosomal protein S10 [Streptomyces albulus] >gb
| 528 | 3.2e-68 |
| GGJ19286.1 | 30S ribosomal protein S10 [Streptomyces brasiliensis]
| 527 | 4.5e-68 |
| GGQ81972.1 | 30S ribosomal protein S10 [Streptomyces pilosus]
| 527 | 4.9e-68 |
| WP_014054162.1 | MULTISPECIES: 30S ribosomal protein S10 [Streptomyces] >dbj
| 524 | 7.0e-68 |
| WP_004571821.1 | MULTISPECIES: 30S ribosomal protein S10 [Streptomyces] >gb
| 524 | 7.1e-68 |
| WP_016473429.1 | MULTISPECIES: 30S ribosomal protein S10 [Streptomyces] >gb
| 523 | 9.0e-68 |
| GGW98954.1 | hypothetical protein GCM10010341_20680 [Streptomyces albulus] >e...
| 526 | 1.1e-67 |
| WP_014144312.1 | MULTISPECIES: 30S ribosomal protein S10 [Streptomyces] >gb
| 523 | 1.1e-67 |
| WP_159481494.1 | MULTISPECIES: 30S ribosomal protein S10 [Streptomyces] >lcl
| 521 | 1.9e-67 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3187 | Seems to have no N-terminal signal seq.
|