| ID | SAVERM_4934
| Type | CDS
|
| From | 5992008
| nt length | 225
|
| To | 5992232
| aa length | 74
|
| Gene | rpmC
| pI | 5.91
|
| Definition | putative ribosomal protein L29
| M.W (Da) | 8402
|
| Note | PF00831: Ribosomal L29 protein
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4710 50S ribosomal protein L29 | 142 | 2.0e-47
|
| sgr | SGR_2826 50S ribosomal protein L29 | 141 | 7.0e-47
|
| sam | SAM23877_4506 50S ribosomal protein L29 | 144 | 4.0e-48
|
| scab | SCAB36861 putative ribosomal protein L29 | 142 | 3.0e-47
|
| sace | SACE_6828 50S ribosomal protein L29 | 90 | 9.0e-27
|
| nfar | nfa7410 rpmC ribosomal protein L29 | 100 | 1.5e-23
|
| mtub | gi|15607849 50S ribosomal protein L29 [Mycobacterium tuberculosis H37Rv] | 95 | 4.5e-22
|
| cglu | gi|19551754 COG0255:Ribosomal protein L29 [Corynebacterium glutamicum] | 97 | 6.8e-23
|
| bsub | BG10756 rpmC; 50S ribosomal protein L29 | 73 | 2.3e-15
|
| ecoli | gi|16131191 50S ribosomal protein L29 [Escherichia coli K12] | 58 | 8.0e-11
|
| paer | PA4255 [gene=rpmC] [prot=50S ribosomal protein L29] [comment=PA4255] | 48 | 1.2e-07
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L29 | 1 | Ribosomal L29 protein | 8-64 | 92.5 | 1.1e-26
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_043676824.1 | 50S ribosomal protein L29 [Streptomyces xylophagus]
| 291 | 3.6e-33 |
| GCB46773.1 | LSU ribosomal protein L29p [Streptomyces sp. NL15-2K]
| 290 | 5.0e-33 |
| WP_127912615.1 | MULTISPECIES: 50S ribosomal protein L29 [Streptomyces] >lcl
| 290 | 5.1e-33 |
| WP_005481220.1 | MULTISPECIES: 50S ribosomal protein L29 [Streptomyces] >gb
| 290 | 6.0e-33 |
| AXG56143.1 | 50S ribosomal protein L29 [Streptomyces lincolnensis] >gb
| 290 | 6.1e-33 |
|
| 289 | 7.9e-33 |
| WP_086752859.1 | MULTISPECIES: 50S ribosomal protein L29 [Streptomyces] >lcl
| 288 | 1.1e-32 |
| WP_016473420.1 | MULTISPECIES: 50S ribosomal protein L29 [Streptomyces] >gb
| 287 | 1.3e-32 |
| WP_007825990.1 | MULTISPECIES: 50S ribosomal protein L29 [unclassified Strept...
| 287 | 1.5e-32 |
| EHM31135.1 | 50S ribosomal protein L29 [Streptomyces sp. W007] >gb
| 287 | 1.5e-32 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3609 | Seems to have no N-terminal signal seq.
|