| ID | SAVERM_4935
| Type | CDS
|
| From | 5992232
| nt length | 285
|
| To | 5992516
| aa length | 94
|
| Gene | rpsQ
| pI | 10.64
|
| Definition | putative ribosomal protein S17
| M.W (Da) | 10719
|
| Note | PF00366: Ribosomal protein S17
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4711 30S ribosomal protein S17 | 171 | 6.0e-58
|
| sgr | SGR_2825 30S ribosomal protein S17 | 176 | 4.0e-60
|
| sam | SAM23877_4507 30S ribosomal subunit protein S17 | 181 | 4.0e-62
|
| scab | SCAB36851 putative ribosomal protein S17 | 172 | 1.0e-58
|
| sace | SACE_6827 30S ribosomal protein S17 | 133 | 3.0e-43
|
| nfar | nfa7420 rpsQ ribosomal protein S17 | 130 | 1.3e-32
|
| mtub | gi|15607850 30S ribosomal protein S17 [Mycobacterium tuberculosis H37Rv] | 129 | 3.7e-32
|
| cglu | gi|19551755 COG0186:Ribosomal protein S17 [Corynebacterium glutamicum] | 114 | 8.5e-28
|
| bsub | BG10757 rpsQ; 30S ribosomal protein S17 | 100 | 1.2e-23
|
| ecoli | gi|16131190 30S ribosomal protein S17 [Escherichia coli K12] | 94 | 1.3e-21
|
| paer | PA4254 [gene=rpsQ] [prot=30S ribosomal protein S17] [comment=PA4254] | 95 | 8.1e-22
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S17 | 1 | Ribosomal protein S17 | 21-88 | 105.1 | 1.4e-30
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_065963004.1 | MULTISPECIES: 30S ribosomal protein S17 [Streptomyces] >lcl
| 477 | 7.3e-61 |
| WP_211039088.1 | 30S ribosomal protein S17 [Streptomyces tardus] >lcl
| 476 | 8.6e-61 |
| WP_148010025.1 | MULTISPECIES: 30S ribosomal protein S17 [Streptomyces] >gb
| 474 | 2.0e-60 |
| WP_004571831.1 | MULTISPECIES: 30S ribosomal protein S17 [Streptomyces] >gb
| 471 | 5.8e-60 |
| WP_191209737.1 | 30S ribosomal protein S17 [Streptomyces chumphonensis] >lcl
| 470 | 6.5e-60 |
| WP_069462149.1 | 30S ribosomal protein S17 [Streptomyces rubidus] >emb
| 468 | 1.5e-59 |
| WP_031524791.1 | 30S ribosomal protein S17 [Streptomyces sp. NRRL F-5123]
| 466 | 2.6e-59 |
| WP_138352904.1 | MULTISPECIES: 30S ribosomal protein S17 [Streptomyces] >gb
| 463 | 8.9e-59 |
| WP_043676826.1 | 30S ribosomal protein S17 [Streptomyces xylophagus]
| 462 | 1.0e-58 |
| WP_070017418.1 | MULTISPECIES: 30S ribosomal protein S17 [Streptomyces] >lcl
| 462 | 1.1e-58 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3493 | Seems to have no N-terminal signal seq.
|