| ID | SAVERM_4938
| Type | CDS
|
| From | 5993314
| nt length | 558
|
| To | 5993871
| aa length | 185
|
| Gene | rplE
| pI | 10.18
|
| Definition | putative ribosomal protein L5
| M.W (Da) | 20796
|
| Note | PF00673: ribosomal L5P family C-terminus
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4714 50S ribosomal protein L5 | 371 | 3.0e-134
|
| sgr | SGR_2822 50S ribosomal protein L5 | 361 | 3.0e-130
|
| sam | SAM23877_4510 50S ribosomal protein L5 | 371 | 3.0e-134
|
| scab | SCAB36821 putative ribosomal protein L5 | 375 | 6.0e-136
|
| sace | SACE_6824 50S ribosomal protein L5 | 265 | 1.0e-92
|
| nfar | nfa7760 rplE ribosomal protein L5 | 292 | 1.1e-80
|
| mtub | gi|15607856 50S ribosomal protein L5 [Mycobacterium tuberculosis H37Rv] | 273 | 5.2e-75
|
| cglu | gi|19551760 COG0094:Ribosomal protein L5 [Corynebacterium glutamicum] | 283 | 4.6e-78
|
| bsub | BG10760 rplE; 50S ribosomal protein L5 | 229 | 9.9e-62
|
| ecoli | gi|16131187 50S ribosomal protein L5 [Escherichia coli K12] | 228 | 1.9e-61
|
| paer | PA4251 [gene=rplE] [prot=50S ribosomal protein L5] [comment=PA4251] | 227 | 5.7e-61
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L5_C | 1 | ribosomal L5P family C-terminus | 89-182 | 132.2 | 5.4e-39
|
| Ribosomal_L5 | 1 | Ribosomal protein L5 | 29-85 | 97.5 | 3.8e-28
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_055614921.1 | 50S ribosomal protein L5 [Streptomyces phaeochromogenes]
| 968 | 7.1e-133 |
| WP_149511970.1 | 50S ribosomal protein L5 [Streptomyces apricus] >lcl
| 967 | 1.0e-132 |
| WP_100594878.1 | 50S ribosomal protein L5 [Streptomyces sp. CB01635] >gb
| 965 | 1.9e-132 |
| WP_005481216.1 | MULTISPECIES: 50S ribosomal protein L5 [Streptomyces] >lcl
| 963 | 4.1e-132 |
| WP_055553506.1 | MULTISPECIES: 50S ribosomal protein L5 [Streptomyces] >gb
| 962 | 5.0e-132 |
| WP_147987686.1 | MULTISPECIES: 50S ribosomal protein L5 [Streptomyces] >lcl
| 962 | 6.5e-132 |
| WP_107022199.1 | MULTISPECIES: 50S ribosomal protein L5 [Streptomyces] >lcl
| 962 | 6.7e-132 |
| WP_081218893.1 | MULTISPECIES: 50S ribosomal protein L5 [unclassified Strepto...
| 961 | 8.0e-132 |
| WP_153289112.1 | 50S ribosomal protein L5 [Streptomyces fagopyri] >gb
| 961 | 8.8e-132 |
| WP_148010026.1 | MULTISPECIES: 50S ribosomal protein L5 [unclassified Strepto...
| 960 | 1.1e-131 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.5030 | Seems to have no N-terminal signal seq.
|