| ID | SAVERM_4944
| Type | CDS
|
| From | 5996273
| nt length | 183
|
| To | 5996455
| aa length | 60
|
| Gene | rpmD
| pI | 10.36
|
| Definition | putative ribosomal protein L30
| M.W (Da) | 6889
|
| Note | PF00327: Ribosomal protein L30p/L7e
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4720 50S ribosomal protein L30 | 122 | 1.0e-39
|
| sgr | SGR_2816 50S ribosomal protein L30 | 113 | 2.0e-36
|
| sam | SAM23877_4516 50S ribosomal subunit protein L30 | 122 | 1.0e-39
|
| scab | SCAB36761 putative ribosomal protein L30 | 121 | 2.0e-39
|
| sace | SACE_6818 50S ribosomal protein L30 | 75 | 4.0e-21
|
| nfar | nfa7920 rpmD ribosomal protein L30 | 81 | 1.3e-17
|
| mtub | gi|15607862 50S ribosomal protein L30 [Mycobacterium tuberculosis H37Rv] | 60 | 1.6e-11
|
| cglu | gi|19551778 COG1841:Ribosomal protein L30/L7E [Corynebacterium glutamicum] | 68 | 3.6e-14
|
| bsub | BG10443 rpmD; 50S ribosomal protein L30 | 56 | 1.8e-10
|
| ecoli | gi|16131181 50S ribosomal protein L30 [Escherichia coli K12] | 53 | 2.6e-09
|
| paer | PA4245 [gene=rpmD] [prot=50S ribosomal protein L30] [comment=PA4245] | 47 | 1.7e-07
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L30 | 1 | Ribosomal protein L30p/L7e | 4-54 | 60.1 | 1.3e-16
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_045559458.1 | MULTISPECIES: 50S ribosomal protein L30 [Streptomyces] >lcl
| 308 | 4.1e-36 |
| WP_053846785.1 | MULTISPECIES: 50S ribosomal protein L30 [unclassified Strept...
| 307 | 5.0e-36 |
| EKX68278.1 | ribosomal protein L30 [Streptomyces ipomoeae 91-03] >dbj
| 306 | 8.0e-36 |
| WP_010473936.1 | MULTISPECIES: 50S ribosomal protein L30 [Streptomyces] >gb
| 306 | 8.1e-36 |
| WP_003974250.1 | MULTISPECIES: 50S ribosomal protein L30 [Streptomyces] >sp
| 305 | 9.4e-36 |
| WP_046263519.1 | 50S ribosomal protein L30 [Streptomyces sp. WM6386] >gb
| 305 | 1.1e-35 |
| WP_013001408.1 | MULTISPECIES: 50S ribosomal protein L30 [Streptomyces] >lcl
| 304 | 1.5e-35 |
| WP_030567278.1 | 50S ribosomal protein L30 [Streptomyces aureocirculatus]
| 304 | 1.6e-35 |
| WP_055553514.1 | MULTISPECIES: 50S ribosomal protein L30 [Streptomyces] >gb
| 304 | 1.6e-35 |
| WP_071364958.1 | 50S ribosomal protein L30 [Streptomyces colonosanans] >gb
| 304 | 1.7e-35 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3906 | Seems to have no N-terminal signal seq.
|