| ID | SAVERM_4945
| Type | CDS
|
| From | 5996458
| nt length | 456
|
| To | 5996913
| aa length | 151
|
| Gene | rplO
| pI | 10.83
|
| Definition | putative ribosomal protein L15
| M.W (Da) | 16021
|
| Note | PF01305: Ribosomal protein L15 amino terminal region
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4721 50S ribosomal protein L15 | 296 | 1.0e-105
|
| sgr | SGR_2815 50S ribosomal protein L15 | 283 | 1.0e-100
|
| sam | SAM23877_4517 50S ribosomal protein L15 | 296 | 1.0e-105
|
| scab | SCAB36751 putative ribosomal protein L15 | 288 | 2.0e-102
|
| sace | SACE_6817 50S ribosomal protein L15 | 188 | 3.0e-63
|
| nfar | nfa7930 rplO ribosomal protein L15 | 221 | 1.6e-59
|
| mtub | gi|15607863 50S ribosomal protein L15 [Mycobacterium tuberculosis H37Rv] | 201 | 1.4e-53
|
| cglu | gi|19551779 COG0200:Ribosomal protein L15 [Corynebacterium glutamicum] | 199 | 3.7e-53
|
| bsub | BG10444 rplO; 50S ribosomal protein L15 | 120 | 3.5e-29
|
| ecoli | gi|16131180 50S ribosomal protein L15 [Escherichia coli K12] | 76 | 8.5e-16
|
| paer | PA4244 [gene=rplO] [prot=50S ribosomal protein L15] [comment=PA4244] | 74 | 3.3e-15
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L27A | 1 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | 32-148 | 112.4 | 1.8e-32
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_067018996.1 | MULTISPECIES: 50S ribosomal protein L15 [Streptomyces] >gb
| 675 | 2.5e-89 |
| WP_028805749.1 | MULTISPECIES: 50S ribosomal protein L15 [unclassified Strept...
| 675 | 2.9e-89 |
|
| 674 | 3.8e-89 |
| WP_031041533.1 | MULTISPECIES: 50S ribosomal protein L15 [Streptomyces] >gb
| 674 | 4.4e-89 |
| WP_030671797.1 | MULTISPECIES: 50S ribosomal protein L15 [Streptomyces] >lcl
| 673 | 5.4e-89 |
| WP_006140897.1 | MULTISPECIES: 50S ribosomal protein L15 [Streptomyces] >gb
| 673 | 5.8e-89 |
| WP_053846784.1 | MULTISPECIES: 50S ribosomal protein L15 [unclassified Strept...
| 672 | 6.9e-89 |
| OSZ61859.1 | 50S ribosomal protein L15 [Streptomyces pharetrae CZA14]
| 672 | 7.7e-89 |
| WP_059192902.1 | MULTISPECIES: 50S ribosomal protein L15 [Streptomyces] >gb
| 672 | 7.9e-89 |
| WP_110629829.1 | MULTISPECIES: 50S ribosomal protein L15 [Streptomyces] >gb
| 671 | 9.1e-89 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4405 | Seems to have no N-terminal signal seq.
|