| ID | SAVERM_4952
| Type | CDS
|
| From | 6001363
| nt length | 405
|
| To | 6001767
| aa length | 134
|
| Gene | rpsK
| pI | 12.08
|
| Definition | putative ribosomal protein S11
| M.W (Da) | 14384
|
| Note | PF00411: Ribosomal protein S11
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4728 30S ribosomal protein S11 | 271 | 2.0e-96
|
| sgr | SGR_2808 30S ribosomal protein S11 | 272 | 7.0e-97
|
| sam | SAM23877_4523 30S ribosomal subunit protein S11 | 271 | 2.0e-96
|
| scab | SCAB36681 putative ribosomal protein S11 | 272 | 8.0e-97
|
| sace | SACE_6805 30S ribosomal subunit protein S11 | 205 | 2.0e-70
|
| nfar | nfa8350 rpsK ribosomal protein S11 | 233 | 5.5e-63
|
| mtub | gi|15610595 30S ribosomal protein S11 [Mycobacterium tuberculosis H37Rv] | 221 | 1.3e-59
|
| cglu | gi|19551797 COG0100:Ribosomal protein S11 [Corynebacterium glutamicum] | 223 | 2.5e-60
|
| bsub | BG10731 rpsK; 30S ribosomal protein S11 | 183 | 3.5e-48
|
| ecoli | gi|16131176 30S ribosomal protein S11 [Escherichia coli K12] | 157 | 1.8e-40
|
| paer | PA4240 [gene=rpsK] [prot=30S ribosomal protein S11] [comment=PA4240] | 165 | 1.1e-42
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S11 | 1 | Ribosomal protein S11 | 24-133 | 163.9 | 1.3e-48
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_214974325.1 | 30S ribosomal protein S11 [Streptomyces sp. ISL-100] >lcl
| 610 | 5.4e-80 |
| WP_053682608.1 | MULTISPECIES: 30S ribosomal protein S11 [unclassified Strept...
| 601 | 1.5e-78 |
| WP_042165126.1 | MULTISPECIES: 30S ribosomal protein S11 [Streptomyces] >gb
| 601 | 1.5e-78 |
| WP_006376016.1 | MULTISPECIES: 30S ribosomal protein S11 [Streptomyces] >dbj
| 599 | 3.0e-78 |
| WP_003948617.1 | MULTISPECIES: 30S ribosomal protein S11 [Streptomyces] >sp
| 599 | 3.0e-78 |
| WP_235494577.1 | 30S ribosomal protein S11 [Streptomyces violaceoruber] >lcl
| 599 | 3.3e-78 |
| WP_037912406.1 | MULTISPECIES: 30S ribosomal protein S11 [Streptomyces] >emb
| 598 | 4.3e-78 |
| WP_125496499.1 | MULTISPECIES: 30S ribosomal protein S11 [Streptomyces] >gb
| 597 | 5.5e-78 |
| WP_189712332.1 | 30S ribosomal protein S11 [Streptomyces phaeofaciens] >dbj
| 597 | 6.9e-78 |
| WP_040024299.1 | 30S ribosomal protein S11 [Streptomyces sp. 150FB] >gb
| 596 | 8.8e-78 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2804 | Seems to have no N-terminal signal seq.
|