| ID | SAVERM_4982
| Type | CDS
|
| From | 6028705
| nt length | 2229
|
| To | 6030933
| aa length | 742
|
| Gene | xynB2
| pI | 4.93
|
| Definition | putative xylan 1,4-beta-xylosidase
| M.W (Da) | 78243
|
| Note | PF01915: Glycosyl hydrolase family 3 C terminal domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0293 putative beta-xylosidase | 872 | 0.0e+00
|
| sgr | SGR_3126 putative beta-glucosidase | 326 | 3.0e-101
|
| sam | SAM23877_1057 putative beta-D-xylosidase | 825 | 0.0e+00
|
| scab | SCAB36421 putative xylan 1,4-beta-xylosidase | 902 | 0.0e+00
|
| nfar | nfa29580 beta-glucosidase | 275 | 7.9e-75
|
| mtub | gi|15607327 PROBABLE BETA-GLUCOSIDASE BGLS (GENTIOBIASE) (CELLOBIASE) (BETA-D-GLUCOSIDE GLUCOHYDROLASE) [Mycobacterium tuberculosis H37Rv] | 259 | 3.4e-70
|
| ecoli | gi|16130070 beta-D-glucoside glucohydrolase, periplasmic [Escherichia coli K12] | 295 | 7.3e-81
|
| paer | PA1726 [gene=bglX] [prot=periplasmic beta-glucosidase] [comment=PA1726] | 314 | 1.6e-86
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Glyco_hydro_3 | 1 | Glycosyl hydrolase family 3 N terminal domain | 79-321 | 210.1 | 4.6e-62
|
| Glyco_hydro_3_C | 1 | Glycosyl hydrolase family 3 C-terminal domain | 384-603 | 165.8 | 1.1e-48
|
| Fn3-like | 1 | Fibronectin type III-like domain | 640-709 | 61.8 | 4.5e-17
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_033326623.1 | glycoside hydrolase family 3 C-terminal domain-containing pr...
| 3185 | 0.0e+00 |
| WP_189190291.1 | glycoside hydrolase family 3 C-terminal domain-containing pr...
| 3168 | 0.0e+00 |
| WP_189325344.1 | glycoside hydrolase family 3 C-terminal domain-containing pr...
| 3168 | 0.0e+00 |
| WP_165337650.1 | glycoside hydrolase family 3 C-terminal domain-containing pr...
| 3167 | 0.0e+00 |
| WP_079064959.1 | glycoside hydrolase family 3 C-terminal domain-containing pr...
| 3163 | 0.0e+00 |
| KUN47190.1 | beta-glucosidase [Streptomyces olivochromogenes]
| 3161 | 0.0e+00 |
| QIY97757.1 | glycosyl hydrolase [Streptomyces sp. S1D4-11]
| 3157 | 0.0e+00 |
| WP_168494695.1 | glycoside hydrolase family 3 C-terminal domain-containing pr...
| 3154 | 0.0e+00 |
| WP_138045106.1 | glycoside hydrolase family 3 C-terminal domain-containing pr...
| 3154 | 0.0e+00 |
| WP_075028483.1 | glycoside hydrolase family 3 C-terminal domain-containing pr...
| 3153 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1298 | Seems to have no N-terminal signal seq.
|