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IDSAVERM_4987 TypeCDS
From6035525 nt length1275
To6036799 aa length424
Genesig43 pI5.76
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)46019
NotePF04542: Sigma-70 region 2 AseI frg.I
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4757 undefined product5360.0e+00
samSAM23877_4553 hypothetical protein5620.0e+00
scabSCAB36341 putative RNA polymerase sigma factor6130.0e+00
nfarnfa38200 sigma factor4214.7e-119

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 223-8543.81.4e-11

Sigma70_r4_21Sigma-70, region 4124-17336.03.7e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
SOE29834.1 RNA polymerase, sigma subunit, ECF family [Streptomyces sp. OK22... 14880.0e+00
WP_143605580.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 14870.0e+00
NEB31483.1 RNA polymerase sigma factor [Streptomyces sp. SID14446] 14870.0e+00
WP_097289142.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 14870.0e+00
GHD51439.1 RNA polymerase subunit sigma-24 [Streptomyces mirabilis] 14860.0e+00
WP_190170112.1 RNA polymerase sigma factor [Streptomyces mirabilis] 14850.0e+00
WP_217573348.1 RNA polymerase sigma factor [Streptomyces sp. GbtcB7] 14830.0e+00
WP_143611394.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 14830.0e+00
WP_081218927.1 RNA polymerase sigma factor [Streptomyces sp. M41(2017)] >gb... 14830.0e+00
WP_143652161.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 14810.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1893 Seems to have no N-terminal signal seq.