| ID | SAVERM_5144
| Type | CDS
|
| From | 6250204
| nt length | 963
|
| To | 6249242
| aa length | 320
|
| Gene | opuBC2
| pI | 5.48
|
| Definition | putative ABC transporter substrate-binding protein
| M.W (Da) | 34277
|
| Note | osmoprotectant transport system permease protein, PF04069: Substrate binding domain of ABC-type glycine betaine transport system
| AseI frg. | B
|
| SignalP v.4.0 | Signal peptide | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2933 putative permease binding-protein component | 516 | 0.0e+00
|
| sgr | SGR_4607 putative ABC transporter solute-binding protein | 433 | 2.0e-154
|
| sam | SAM23877_2970 Permease binding-protein component | 505 | 0.0e+00
|
| sace | SACE_0080 possible glycine betaine/carnitine/choline binding protein precursor | 301 | 1.0e-102
|
| nfar | nfa32500 transporter permease | 262 | 2.6e-71
|
| bsub | BG12635 opuBC, proX; glycine betaine/proline/choline transport system substrate-binding protein | 100 | 8.7e-23
|
| ecoli | gi|16130069 putative glycine/betaine/choline transport protein, osmoprotection (ABC superfamily, peri_bind) [Escherichia coli K12] | 122 | 3.2e-29
|
| paer | PA3889 [gene=PA3889] [prot=probable binding protein component of ABC transporter] [comment=PA3889] | 193 | 1.5e-50
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| OpuAC | 1 | Substrate binding domain of ABC-type glycine betaine transport system | 45-313 | 201.9 | 1.2e-59
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_019065943.1 | glycine betaine ABC transporter substrate-binding protein [S...
| 1446 | 0.0e+00 |
| WP_033286023.1 | glycine betaine ABC transporter substrate-binding protein [S...
| 1442 | 0.0e+00 |
| WP_181651167.1 | glycine betaine ABC transporter substrate-binding protein [S...
| 1441 | 0.0e+00 |
| WP_143632654.1 | glycine betaine ABC transporter substrate-binding protein [S...
| 1441 | 0.0e+00 |
| WP_093627192.1 | glycine betaine ABC transporter substrate-binding protein [S...
| 1441 | 0.0e+00 |
| WP_079065571.1 | glycine betaine ABC transporter substrate-binding protein [S...
| 1440 | 0.0e+00 |
|
| 1440 | 0.0e+00 |
| KUN41423.1 | glycine/betaine ABC transporter substrate-binding protein [Strept...
| 1439 | 0.0e+00 |
| WP_026150326.1 | glycine betaine ABC transporter substrate-binding protein [S...
| 1438 | 0.0e+00 |
|
| 1436 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1022 | May be a lipoprotein
|