| ID | SAVERM_5151
| Type | CDS
|
| From | 6256583
| nt length | 1416
|
| To | 6257998
| aa length | 471
|
| Gene | glcD2
| pI | 4.51
|
| Definition | putative (S)-2-hydroxy-acid oxidase
| M.W (Da) | 49120
|
| Note | similar to glycolate oxidase: PF01565: FAD binding domain
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2925 putative oxidoreductase subunit | 792 | 0.0e+00
|
| sgr | SGR_4614 putative oxidoreductase | 768 | 0.0e+00
|
| sam | SAM23877_2963 Glycolate oxidase subunit GlcD | 846 | 0.0e+00
|
| scab | SCAB56391 putative (S)-2-hydroxy-acid oxidase | 830 | 0.0e+00
|
| sace | SACE_3870 putative glycolate oxidase | 482 | 3.0e-169
|
| bsub | BG12320 ysfC; similar to glycolate oxidase subunit [EC:1.1.3.15] | 346 | 1.5e-96
|
| ecoli | gi|16130879 glycolate oxidase subunit D [Escherichia coli K12] | 298 | 4.0e-82
|
| paer | PA5355 [gene=glcD] [prot=glycolate oxidase subunit GlcD] [comment=PA5355] | 303 | 1.7e-83
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| FAD-oxidase_C | 1 | FAD linked oxidases, C-terminal domain | 232-470 | 226.8 | 2.9e-67
|
| FAD_binding_4 | 1 | FAD binding domain | 56-194 | 131.6 | 1.4e-38
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2440 | Seems to have no N-terminal signal seq.
|