| ID | SAVERM_5170
| Type | CDS
|
| From | 6277137
| nt length | 735
|
| To | 6277871
| aa length | 244
|
| Gene | rphA
| pI | 5.91
|
| Definition | putative ribonuclease PH
| M.W (Da) | 26091
|
| Note | PF01138: 3' exoribonuclease family, domain 1
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2904 putative ribonuclease PH | 445 | 1.0e-161
|
| sgr | SGR_4638 putative ribonuclease PH | 441 | 7.0e-160
|
| sam | SAM23877_2941 Ribonuclease PH | 434 | 2.0e-157
|
| scab | SCAB56731 putative ribonuclease PH | 460 | 2.0e-167
|
| sace | SACE_1212 ribonuclease PH | 295 | 2.0e-102
|
| nfar | nfa10950 rph RNase PH | 290 | 8.0e-80
|
| mtub | gi|15608480 ribonuclease PH [Mycobacterium tuberculosis H37Rv] | 285 | 1.5e-78
|
| cglu | gi|19553701 COG0689:RNase PH [Corynebacterium glutamicum] | 279 | 7.7e-77
|
| bsub | BG10357 rph; ribonuclease PH [EC:2.7.7.56] | 252 | 1.3e-68
|
| ecoli | gi|16131514 ribonuclease PH [Escherichia coli K12] | 273 | 1.0e-74
|
| paer | PA5334 [gene=rph] [prot=ribonuclease PH] [comment=PA5334] | 281 | 3.0e-77
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RNase_PH | 1 | 3' exoribonuclease family, domain 1 | 11-141 | 89.5 | 2.4e-25
|
| RNase_PH_C | 1 | 3' exoribonuclease family, domain 2 | 162-226 | 44.5 | 1.1e-11
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1829 | Seems to have no N-terminal signal seq.
|