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IDSAVERM_527 TypeCDS
From671956 nt length618
To672573 aa length205
Genesig4 pI11.48
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)22161
NotePF08281: Sigma-70, region 4 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
scabSCAB80681 putative RNA polymerase sigma factor2657.0e-92

*scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4151-19946.91.5e-12

Sigma70_r41Sigma-70, region 4153-20232.06e-08

Sigma70_r21Sigma-70 region 250-11930.91.5e-07

Sigma70_ECF1ECF sigma factor35-20326.74.1e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
GAX57864.1 RNA polymerase sigma24 factor [Streptomyces olivochromogenes] 6116.6e-78
SOD80985.1 RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces sp. ... 6012.4e-76
SOE33844.1 RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces sp. ... 5933.1e-75
GGZ73847.1 hypothetical protein GCM10010344_46060 [Streptomyces bluensis] 5939.3e-75
5911.2e-74
GHB75487.1 RNA polymerase sigma24 factor [Streptomyces spinoverrucosus] 5803.6e-73
GGU66079.1 hypothetical protein GCM10010211_34150 [Streptomyces albospinus] 5582.3e-69
WP_184765072.1 RNA polymerase sigma factor [Streptomyces albaduncus] >lcl 5481.5e-68
5454.0e-68
WP_189327844.1 RNA polymerase sigma factor [Streptomyces flaveus] >dbj 5475.3e-68

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3334 Seems to have no N-terminal signal seq.