| ID | SAVERM_5316
| Type | CDS
|
| From | 6443541
| nt length | 390
|
| To | 6443152
| aa length | 129
|
| Gene | rbsD
| pI | 6.94
|
| Definition | putative D-ribose ABC transporter permease protein
| M.W (Da) | 13628
|
| Note | simple sugar ABC transporter permease protein, PF05025: RbsD / FucU transport protein family
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2749 carbohydrate transport protein | 214 | 5.0e-74
|
| sgr | SGR_1093 putative D-ribose ABC transporter auxiliary component | 214 | 4.0e-74
|
| sam | SAM23877_2774 D-ribose pyranase | 187 | 3.0e-63
|
| scab | SCAB13241 putative D-ribose ABC transporter permease protein | 94 | 2.0e-26
|
| cglu | gi|19552476 COG1869:Uncharacterized components of ribose/xylose transport systems [Corynebacterium glutamicum] | 95 | 5.6e-22
|
| bsub | BG10878 rbsD; D-ribose transport system permease protein | 110 | 2.7e-26
|
| ecoli | gi|16131616 D-ribose high-affinity transport system; membrane-associated protein [Escherichia coli K12] | 98 | 9.1e-23
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RbsD_FucU | 1 | RbsD / FucU transport protein family | 1-127 | 133.0 | 8.1e-39
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0326 | Seems to have no N-terminal signal seq.
|