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IDSAVERM_5318 TypeCDS
From6446464 nt length1947
To6444518 aa length648
GenerbsB2 pI10.32
Definitionputative D-ribose ABC transporter substrate-binding protein/permease protein M.W (Da)65021
Notesimple sugar ABC transporter substrate-binding protein/permease protein, PF02653: Branched-chain amino acid transport system / permease component AseI frg.B
SignalP v.4.0Non-secretory protein | plot Categorytransport / binding proteins & lipoproteins

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO2747 bifunctional carbohydrate binding and transport protein10640.0e+00
sgrSGR_1095 putative D-ribose ABC transporter substrate-binding/permease protein9380.0e+00
samSAM23877_2772 Ribose ABC transport system, permease protein RbsC10310.0e+00
scabSCAB58711 putative LacI-family transcriptional regulator, ribose operon repressor3922.0e-134
saceSACE_5660 putative D-ribose ABC transporter permease protein6420.0e+00
cglugi|19552474 COG1172:Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Corynebacterium glutamicum]3531.1e-98
bsubBG10880 rbsC; D-ribose transport system permease protein2656.2e-72
ecoligi|16131619 D-ribose periplasmic binding protein [Escherichia coli K12]2632.6e-71
paerPA1948 [gene=rbsC] [prot=membrane protein component of ABC ribose transporter] [comment=PA1948]1927.9e-50

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Peripla_BP_41Periplasmic binding protein domain374-626223.23.8e-66

BPD_transp_21Branched-chain amino acid transport system / permease component50-314160.15.5e-47

Peripla_BP_11Periplasmic binding proteins and sugar binding domain of LacI family371-62078.93.9e-22

Peripla_BP_31Periplasmic binding protein-like domain493-63957.81.5e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
NEB29353.1 substrate-binding domain-containing protein [Streptomyces sp. SID... 24490.0e+00
WP_081217374.1 substrate-binding domain-containing protein [Streptomyces sp... 24460.0e+00
WP_153290482.1 substrate-binding domain-containing protein [Streptomyces fa... 24410.0e+00
WP_097225820.1 substrate-binding domain-containing protein [Streptomyces sp... 24260.0e+00
WP_151484980.1 substrate-binding domain-containing protein [Streptomyces al... 24260.0e+00
WP_097284814.1 MULTISPECIES: substrate-binding domain-containing protein [u... 24250.0e+00
WP_181651267.1 substrate-binding domain-containing protein [Streptomyces sp... 24230.0e+00
WP_099922548.1 substrate-binding domain-containing protein [Streptomyces mi... 24220.0e+00
WP_217457662.1 substrate-binding domain-containing protein [Streptomyces sp... 24210.0e+00
WP_075029244.1 substrate-binding domain-containing protein [Streptomyces mi... 24200.0e+00

PSORT result

LocalizationCertaintyPSORT said
membrane0.5564 Seems to have no N-terminal signal seq.