| ID | SAVERM_5386
| Type | CDS
|
| From | 6532474
| nt length | 537
|
| To | 6533010
| aa length | 178
|
| Gene |
| pI | 10.69
|
| Definition | putative endonuclease
| M.W (Da) | 19744
|
| Note | PF01844: HNH endonuclease
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2655 hypothetical protein | 350 | 2.0e-126
|
| sgr | SGR_4876 putative endonuclease | 340 | 3.0e-122
|
| sam | SAM23877_2705 hypothetical protein | 350 | 3.0e-126
|
| scab | SCAB59511 putative endonuclease | 345 | 2.0e-124
|
| sace | SACE_1334 HNH endonuclease | 182 | 2.0e-60
|
| nfar | nfa13130 endonuclease | 172 | 1.5e-44
|
| mtub | gi|15609606 hypothetical protein Rv2469c [Mycobacterium tuberculosis H37Rv] | 175 | 1.4e-45
|
| cglu | gi|19552079 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 34 | 3.5e-03
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HNH_5 | 1 | HNH endonuclease | 83-124 | 48.0 | 7.6e-13
|
| HNH | 1 | HNH endonuclease | 83-123 | 41.5 | 1e-10
|
| HNH_4 | 1 | HNH endonuclease | 92-124 | 28.7 | 8.4e-07
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1127 | Seems to have no N-terminal signal seq.
|