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IDSAVERM_5398 TypeCDS
From6545341 nt length540
To6545880 aa length179
Genesig46 pI7.86
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)19757
NotePF04545: Sigma-70, region 4 AseI frg.B
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO2639 putative RNA polymerase sigma factor2879.0e-101
samSAM23877_2689 RNA polymerase sigma factor2989.0e-106
scabSCAB59631 putative RNA polymerase sigma factor2796.0e-98

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4123-17159.61.4e-16

Sigma70_r4_21Sigma-70, region 4118-16952.13.5e-14

Sigma70_r21Sigma-70 region 241-9026.83.1e-06

Sigma70_ECF1ECF sigma factor71-16824.81.6e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_202497517.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8494.5e-115
WP_179382280.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8089.1e-109
WP_173883422.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gl... 8062.6e-108
WP_181359339.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8037.0e-108
PAZ12474.1 RNA polymerase subunit sigma-70 [Streptomyces sp. SA15] 7983.0e-107
WP_180289162.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7983.8e-107
WP_199791449.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7941.3e-106
OSZ55607.1 RNA polymerase subunit sigma-70 [Streptomyces pharetrae CZA14] 7932.1e-106
WP_179332427.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7922.6e-106
WP_030670148.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ce... 7932.6e-106

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1669 Seems to have no N-terminal signal seq.