| ID | SAVERM_5426
| Type | CDS
|
| From | 6579813
| nt length | 480
|
| To | 6580292
| aa length | 159
|
| Gene | rpiB2
| pI | 5.18
|
| Definition | putative ribose-5-phosphate isomerase
| M.W (Da) | 17082
|
| Note | PF02502: Ribose/Galactose Isomerase
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | main glycolytic pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2627 putative isomerase | 307 | 8.0e-110
|
| sgr | SGR_4915 putative ribose-5-phosphate isomerase | 282 | 7.0e-100
|
| sam | SAM23877_2677 Ribose-5-phosphate isomerase B | 309 | 1.0e-110
|
| scab | SCAB59851 putative ribose-5-phosphate isomerase | 297 | 1.0e-105
|
| sace | SACE_1349 ribose 5-phosphate isomerase RpiB | 202 | 1.0e-68
|
| nfar | nfa13270 ribose 5-phosphate isomerase | 203 | 5.0e-54
|
| mtub | gi|57116993 ribose-5-phosphate isomerase B [Mycobacterium tuberculosis H37Rv] | 196 | 6.2e-52
|
| cglu | gi|19553619 COG0698:Ribose 5-phosphate isomerase RpiB [Corynebacterium glutamicum] | 202 | 4.8e-54
|
| bsub | BG10942 ywlF, ipc-32d, rpiB; ribose 5-phosphate epimerase (pentose phosphate) [EC:5.3.1.6] | 89 | 7.3e-20
|
| ecoli | gi|16131916 ribose-5-phosphate isomerase B [Escherichia coli K12] | 87 | 3.1e-19
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| LacAB_rpiB | 1 | Ribose/Galactose Isomerase | 2-140 | 155.5 | 7.7e-46
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_235453831.1 | ribose-5-phosphate isomerase [Streptomyces olivochromogenes]...
| 762 | 3.3e-102 |
| WP_188286767.1 | ribose-5-phosphate isomerase [Streptomyces sp. TRM68416] >lc...
| 761 | 3.6e-102 |
| WP_028802645.1 | MULTISPECIES: ribose-5-phosphate isomerase [unclassified Str...
| 761 | 4.3e-102 |
| WP_073723063.1 | ribose-5-phosphate isomerase [Streptomyces sp. CB02414] >gb
| 759 | 7.7e-102 |
| WP_189941975.1 | ribose-5-phosphate isomerase [Streptomyces aurantiogriseus] ...
| 758 | 1.3e-101 |
| WP_225100879.1 | ribose-5-phosphate isomerase [Streptomyces sp. CoH27]
| 757 | 1.4e-101 |
| GCB49392.1 | ribose 5-phosphate isomerase B [Streptomyces sp. NL15-2K]
| 757 | 1.4e-101 |
| WP_102928702.1 | MULTISPECIES: ribose-5-phosphate isomerase [Streptomyces] >g...
| 757 | 1.6e-101 |
| WP_046586794.1 | ribose-5-phosphate isomerase [Streptomyces mangrovisoli] >gb...
| 756 | 2.0e-101 |
| WP_234515637.1 | ribose-5-phosphate isomerase [Streptomyces glomeratus] >lcl
| 756 | 2.3e-101 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2406 | Seems to have no N-terminal signal seq.
|